Evidence map›Paper›PMID 31537794›Full record

ArticleNature communications2019

Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals.

George E Gentsch, Thomas Spruce, Nick D L Owens, James C Smith

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Activation of P53 pathway contributes toProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

George E GentschDevelopmental Biology Laboratory, The Francis Crick Institute, London, NW1 1AT, UK. george.gentsch@crick.ac.uk.ORCID http://orcid.org/0000-0001-8365-5122
Thomas SpruceCentre for Genomic Regulation, Barcelona Institute for Science and Technology, 08003, Barcelona, Spain.
Nick D L OwensDepartment of Stem Cell and Developmental Biology, Pasteur Institute, 75015, Paris, France.
James C SmithDevelopmental Biology Laboratory, The Francis Crick Institute, London, NW1 1AT, UK. jim.smith@crick.ac.uk.ORCID http://orcid.org/0000-0003-2413-9392
The Francis Crick Institute · GBBarcelona Institute of Science and Technology · ESInstitut Pasteur · FR

Funding

Wellcome Trust FC001157
6 · The paper itself

Abstract

Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of signal-receiving cells that determines how they respond to inductive signals is known as competence, and it differs in different cell types. Here, we explore the ways in which maternal factors modify chromatin to specify initial competence in the frog Xenopus tropicalis. We identify early-engaged regulatory DNA sequences, and infer from them critical activators of the zygotic genome. Of these, we show that the pioneering activity of the maternal pluripotency factors Pou5f3 and Sox3 determines competence for germ layer formation by extensively remodelling compacted chromatin before the onset of inductive signalling. This remodelling includes the opening and marking of thousands of regulatory elements, extensive chromatin looping, and the co-recruitment of signal-mediating transcription factors. Our work identifies significant developmental principles that inform our understanding of how pluripotent stem cells interpret inductive signals.

Indexed as

AnimalsCell DifferentiationChromatinChromatin Assembly and DisassemblyEmbryonic DevelopmentEmbryonic Stem CellsGene Expression Regulation, DevelopmentalGerm LayersHomeodomain ProteinsPluripotent Stem CellsRegulatory Sequences, Nucleic AcidSOXB1 Transcription FactorsTranscription FactorsXenopusXenopus ProteinsChromatinHomeodomain Proteinspou5f3.1 protein, XenopusSox3 protein, XenopusSOXB1 Transcription FactorsTranscription FactorsXenopus Proteins

Identifiers

PMID31537794
PMCPMC6753111
OpenAlexW2973494285

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.