Evidence map›Paper›PMID 31537626›Full record

ArticleGenes & development2019

Planarians recruit piRNAs for mRNA turnover in adult stem cells.

Iana V Kim, Elizabeth M Duncan, Eric J Ross, Vladyslava Gorbovytska, Stephanie H Nowotarski, Sarah A Elliott, Alejandro Sánchez Alvarado, Claus-D Kuhn

Abstract read
In one paragraph

Article in Genes & development, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. PIWI proteins and piRNAs: key regulators of stem cell biology.Frontiers in cell and developmental biology · 2025
    Review
  6. Article
  7. Science advances · 2024
    Article
  8. Article
  9. Review
  10. Review
  11. Functional genomics in Spiralia.Briefings in functional genomics · 2023
    Article
  12. Insights in piRNA targeting rules.Wiley interdisciplinary reviews. RNA · 2023
    Article
  13. Article
  14. Isolation and Library Preparation of Planarian piRNAs.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  15. Genome-Wide Analysis of Planarian piRNAs.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Iana V KimGene regulation by Non-coding RNA, Elite Network of Bavaria and University of Bayreuth, 95447 Bayreuth, Germany.
Elizabeth M DuncanStowers Institute for Medical Research, Kansas City, Missouri 64110, USA.
Eric J RossStowers Institute for Medical Research, Kansas City, Missouri 64110, USA.
Vladyslava GorbovytskaGene regulation by Non-coding RNA, Elite Network of Bavaria and University of Bayreuth, 95447 Bayreuth, Germany.
Stephanie H NowotarskiStowers Institute for Medical Research, Kansas City, Missouri 64110, USA.
Sarah A ElliottStowers Institute for Medical Research, Kansas City, Missouri 64110, USA.
Alejandro Sánchez AlvaradoStowers Institute for Medical Research, Kansas City, Missouri 64110, USA.
Claus-D KuhnGene regulation by Non-coding RNA, Elite Network of Bavaria and University of Bayreuth, 95447 Bayreuth, Germany.

Funding

The molecular basis of planarian regenerationR37GM057260 · NIGMS · UNIVERSITY OF UTAH · PI SANCHEZ ALVARADO, ALEJANDRO · 2009 to 2018
$2.8M
Howard Hughes Medical InstituteNIGMS NIH HHS R37 GM057260
6 · The paper itself

Abstract

PIWI proteins utilize small RNAs called piRNAs to silence transposable elements, thereby protecting germline integrity. In planarian flatworms, PIWI proteins are essential for regeneration, which requires adult stem cells termed neoblasts. Here, we characterize planarian piRNAs and examine the roles of PIWI proteins in neoblast biology. We find that the planarian PIWI proteins SMEDWI-2 and SMEDWI-3 cooperate to degrade active transposons via the ping-pong cycle. Unexpectedly, we discover that SMEDWI-3 plays an additional role in planarian mRNA surveillance. While SMEDWI-3 degrades numerous neoblast mRNAs in a homotypic ping-pong cycle, it is also guided to another subset of neoblast mRNAs by antisense piRNAs and binds these without degrading them. Mechanistically, the distinct activities of SMEDWI-3 are primarily dictated by the degree of complementarity between target mRNAs and antisense piRNAs. Thus, PIWI proteins enable planarians to repurpose piRNAs for potentially critical roles in neoblast mRNA turnover.

Indexed as

Adult Stem CellsAnimalsBase PairingDNA Transposable ElementsHelminth ProteinsImmunoprecipitationPlanariansProtein BindingRNA, MessengerRNA, Small InterferingRNA StabilityDNA Transposable ElementsHelminth ProteinsRNA, MessengerRNA, Small InterferingmRNA surveillancemRNA turnoverpiRNAsPIWI proteinsplanariansposttranscriptional gene silencingregenerationRNA-binding proteinsS. mediterraneastem cells

Identifiers

PMID31537626
PMCPMC6824462

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.