Evidence map›Paper›PMID 31536894›Full record

ArticleEuropean journal of medicinal chemistry2019

Structure activity relationship towards design of cryptosporidium specific thymidylate synthase inhibitors.

D J Czyzyk, M Valhondo, L Deiana, J Tirado-Rives, W L Jorgensen, K S Anderson

Open access · greenAbstract read
In one paragraph

Article in European journal of medicinal chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

D J CzyzykDepartment of Pharmacology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT, 06520, USA.
M ValhondoDepartment of Chemistry, Yale University, 225 Prospect Street, PO Box 208107, New Haven, CT, 06520, USA.
L DeianaDepartment of Chemistry, Yale University, 225 Prospect Street, PO Box 208107, New Haven, CT, 06520, USA.
J Tirado-RivesDepartment of Chemistry, Yale University, 225 Prospect Street, PO Box 208107, New Haven, CT, 06520, USA.
W L JorgensenDepartment of Chemistry, Yale University, 225 Prospect Street, PO Box 208107, New Haven, CT, 06520, USA. Electronic address: william.jorgensen@yale.edu.
K S AndersonDepartment of Pharmacology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT, 06520, USA; Department of Molecular Biophysics and Biochemistry, Yale University, 225 Prospect Street, PO Box 208107, New Haven, CT, 06520, USA. Electronic address: karen.anderson@yale.edu.
Yale University · US

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
POTENTIAL FUNCTIONS FOR WATER PROTEIN INTERACTIONSR01GM032136 · NIGMS · YALE UNIVERSITY · PI JORGENSEN, WILLIAM L. · 1985 to 2023
$8.2M
Exploring Novel Targeting Strategies for AIDS Protozoal PathogensR01AI083146 · NIAID · YALE UNIVERSITY · PI ANDERSON, KAREN S. · 2010 to 2019
$3.9M
Training in Parasitology and Vector BiologyT32AI007404 · NIAID · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 1991 to 2017
$3.8M
Upgrade of a home source macromolecular X-ray diffraction system.S10OD018007 · OD · YALE UNIVERSITY · PI BOGGON, TITUS JONATHON · 2014 to 2014
$460k
Exploring Novel Targeting Strategies for AIDS Protozoal PathogensR56AI083146 · NIAID · YALE UNIVERSITY · PI ANDERSON, KAREN S. · 2009 to 2009
$414k
NIAID NIH HHS R01 AI083146NIAID NIH HHS R56 AI083146NIAID NIH HHS T32 AI007404NIGMS NIH HHS P30 GM133893NIGMS NIH HHS P41 GM103403NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM032136NIH HHS S10 OD018007
6 · The paper itself

Abstract

Cryptosporidiosis is a human gastrointestinal disease caused by protozoans of the genus Cryptosporidium, which can be fatal in immunocompromised individuals. The essential enzyme, thymidylate synthase (TS), is responsible for de novo synthesis of deoxythymidine monophosphate. The TS active site is relatively conserved between Cryptosporidium and human enzymes. In previous work, we identified compound 1, (2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidin-methyl-phenyl-l-glutamic acid), as a promising selective Cryptosporidium hominis TS (ChTS) inhibitor. In the present study, we explore the structure-activity relationship around 1 glutamate moiety by synthesizing and biochemically evaluating the inhibitory activity of analogues against ChTS and human TS (hTS). X-Ray crystal structures were obtained for compounds bound to both ChTS and hTS. We establish the importance of the 2-phenylacetic acid moiety methylene linker in optimally positioning compounds 23, 24, and 25 within the active site. Moreover, through the comparison of structural data for 5, 14, 15, and 23 bound in both ChTS and hTS identified that active site rigidity is a driving force in determining inhibitor selectivity.

Indexed as

Catalytic DomainCryptosporidiumDrug DesignGlutamatesHumansModels, MolecularMolecular StructurePhenylacetatesProtein BindingPyrimidinesPyrrolesThymidylate SynthaseGlutamatesPhenylacetatesPyrimidinesPyrrolesThymidylate SynthaseAntifolateCryptosporidium hominisSAR studyThymidylate synthaseX-ray crystallography

Identifiers

PMID31536894
PMCPMC6829050
OpenAlexW2971489656

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.