Evidence map›Paper›PMID 31536683›Full record

ArticleMicrobiologyOpen2019

Gene expression responses of tomato inoculated with Pectobacterium carotovorum subsp. carotovorum.

Arnaud T Djami-Tchatchou, Lerato B T Matsaunyane, Khayalethu Ntushelo

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Consortia of3 Biotech · 2024
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Arnaud T Djami-TchatchouDepartment of Agriculture and Animal Health, Science Campus, University of South Africa, Florida, South Africa.
Lerato B T MatsaunyaneAgricultural Research Council-Vegetable and Ornamental Plants, Tshwane, South Africa.
Khayalethu NtusheloDepartment of Agriculture and Animal Health, Science Campus, University of South Africa, Florida, South Africa.ORCID 0000-0002-3413-3384

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Defense responses of tomato (Solanum lycopersicum L.) against attack by Pectobacterium carotovorum subsp. carotovorum (Pcc), the causal agent of soft rot diseases, were studied. The expression of some tomato defense genes were evaluated by real-time PCR quantification analysis, 24 and 72 hr after actively growing tomato plants were inoculated with Pcc. These included: MYB transcriptor factor, ethylene response element-binding protein, suppressor of the G2 allele of Skp1, cytochrome P450, small Sar1 GTPase, hydroxycinnamoyl-CoA:quinate hydroxycinnamoyl transferase, pathogenesis-related protein 1a, endo-1,3-beta-glucanase, chitinase, proteinase inhibitor, defensin, CC-NBS-LRR resistance protein, and phenylalanine ammonia lyase. The results showed dynamic transcriptomic changes, with transcripts exhibiting different expression kinetics at 24 and 72 hr to confer resistance to tomato against Pcc infection.

Indexed as

Gene Expression Regulation, PlantPectobacterium carotovorumGene Expression ProfilingHost-Pathogen InteractionsPlant DiseasesSolanum lycopersicumTranscriptomedefensegene expressionPectobacterium carotovorum subsp. carotovorumtomato

Identifiers

PMID31536683
PMCPMC6925151

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.