Evidence map›Paper›PMID 31536610›Full record

ArticlePLoS pathogens2019

Molecular basis of dengue virus serotype 2 morphological switch from 29°C to 37°C.

Xin-Ni Lim, Chao Shan, Jan K Marzinek, Hongping Dong, Thiam Seng Ng, Justin S G Ooi, Guntur Fibriansah, Jiaqi Wang, Chandra S Verma, Peter J Bond and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Review
  3. An ultrapotent human antibody neutralizes all maturation states of Zika virus.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Pharmaceuticals (Basel, Switzerland) · 2021
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Xin-Ni LimProgram in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.ORCID 0000-0001-8117-3613
Chao ShanNovartis Institute for Tropical Diseases, Singapore, Singapore.ORCID 0000-0002-3953-3782
Jan K MarzinekBioinformatics Institute, Agency of Science, Technology and Research (A*STAR), Singapore, Singapore.
Hongping DongNovartis Institute for Tropical Diseases, Singapore, Singapore.
Thiam Seng NgProgram in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.ORCID 0000-0002-1668-8976
Justin S G OoiProgram in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.
Guntur FibriansahProgram in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.ORCID 0000-0002-9990-3335
Jiaqi WangProgram in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.
Chandra S VermaBioinformatics Institute, Agency of Science, Technology and Research (A*STAR), Singapore, Singapore.ORCID 0000-0003-0733-9798
Peter J BondBioinformatics Institute, Agency of Science, Technology and Research (A*STAR), Singapore, Singapore.ORCID 0000-0003-2900-098X
Pei-Yong ShiNovartis Institute for Tropical Diseases, Singapore, Singapore.ORCID 0000-0001-5553-1616
Shee-Mei LokProgram in Emerging Infectious Diseases, Duke-National University of Singapore Medical School, Singapore, Singapore.ORCID 0000-0003-4631-8041
National University of Singapore · SGAgency for Science, Technology and Research · SGNovartis (Singapore) · SG

Funding

Project 4 - Influenza - UABU19AI142759 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SHI, PEI-YONG · 2019 to 2023
$37.5M
Revolutionary Eilat-based Chikungunya Vaccine VectorR01AI127744 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI WANG, TIAN · 2017 to 2021
$3.5M
Discovery of Zika virus therapeutics using a replicon assayR41AI136126 · NIAID · MICROBIOTIX, INC · PI BOWLIN, TERRY L. · 2018 to 2019
$585k
NIAID NIH HHS R01 AI127744NIAID NIH HHS R41 AI136126NIAID NIH HHS U19 AI142759
6 · The paper itself

Abstract

The ability of DENV2 to display different morphologies (hence different antigenic properties) complicates vaccine and therapeutics development. Previous studies showed most strains of laboratory adapted DENV2 particles changed from smooth to "bumpy" surfaced morphology when the temperature is switched from 29°C at 37°C. Here we identified five envelope (E) protein residues different between two alternative passage history DENV2 NGC strains exhibiting smooth or bumpy surface morphologies. Several mutations performed on the smooth DENV2 infectious clone destabilized the surface, as observed by cryoEM. Molecular dynamics simulations demonstrated how chemically subtle substitution at various positions destabilized dimeric interactions between E proteins. In contrast, three out of four DENV2 clinical isolates showed a smooth surface morphology at 37°C, and only at high fever temperature (40°C) did they become "bumpy". These results imply vaccines should contain particles representing both morphologies. For prophylactic and therapeutic treatments, this study also informs on which types of antibodies should be used at different stages of an infection, i.e., those that bind to monomeric E proteins on the bumpy surface or across multiple E proteins on the smooth surfaced virus.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsAntigens, ViralCell LineCryoelectron MicroscopyDengue VirusHumansModels, MolecularMolecular Dynamics SimulationMutationProtein Interaction Domains and MotifsSequence Homology, Amino AcidSerogroupTemperatureViral Envelope ProteinsAntigens, ViralViral Envelope Proteins

Identifiers

PMID31536610
PMCPMC6752767
OpenAlexW2974426760

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.