Evidence map›Paper›PMID 31536599›Full record

ArticlePloS one2019

Identification and characterization of a novel heparan sulfate-binding domain in Activin A longest variants and implications for function.

Evan Yang, Christina Mundy, Eric F Rappaport, Maurizio Pacifici, Paul C Billings

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Osteochondroma formation is independent of heparanase expression as revealed in a mouse model of hereditary multiple exostoses.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2022
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Evan YangTranslational Research Program in Pediatric Orthopaedics, Division of Orthopaedic Surgery, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Christina MundyTranslational Research Program in Pediatric Orthopaedics, Division of Orthopaedic Surgery, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Eric F RappaportMolecular Genetics Core, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Maurizio PacificiTranslational Research Program in Pediatric Orthopaedics, Division of Orthopaedic Surgery, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.
Paul C BillingsTranslational Research Program in Pediatric Orthopaedics, Division of Orthopaedic Surgery, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, United States of America.ORCID 0000-0002-1365-7664
Children's Hospital of Philadelphia · US

Funding

Pathogenic Mechanisms in Hereditary Multiple Exostoses SyndromeR01AR061758 · NIAMS · CHILDREN'S HOSP OF PHILADELPHIA · PI Maurizio Pacifici · 2011 to 2026
$6.3M
Mechanisms regulating normal and ectopic endochondral ossificationR01AR071946 · NIAMS · CHILDREN'S HOSP OF PHILADELPHIA · PI PACIFICI, MAURIZIO · 2017 to 2021
$1.8M
NIAMS NIH HHS R01 AR061758NIAMS NIH HHS R01 AR071946
6 · The paper itself

Abstract

Activins regulate numerous processes including inflammation and are synthesized as precursors consisting of a long N-terminal pro-region and a mature protein. Genomic human databases currently list three activin A (Act A) variants termed X1, X2 and X3. The X3 variant is the shortest, lacks N-terminal segments present in X1 and X2, and has been the focus of most past literature. Here, we asked whether these variants are expressed by human cells and tissues and what structural features are contained within their pro-regions. Human monocytic-like cells THP1 and U937 expressed X1 and X2 variants after exposure to phorbol ester or granulocyte-macrophage colony-stimulating factor, while X2 transcripts were present in placenta. Expression vectors encoding full length X2 or X3 variants resulted in production and secretion of biologically active Act A from cultured cells. Previous studies reported a putative HS-binding domain (HBD) in the X3 pro-region. Here, we identified a novel HBD with consensus HS-binding motifs near the N-terminal end of X1 and X2 pro-regions. Peptides encompassing this new domain interacted with substrate-bound HS with nanomolar affinity, while peptides from putative X3 HBD did not. In good agreement, full length X2 pro-region interacted with heparin-agarose, while the X3 pro-region did not. In sum, our study reveals that Act A variants are expressed by inflammatory cells and placenta and yield biological activity. The high affinity HBD in X1 and X2 pro-region and its absence in X3 could greatly influence overall Act A distribution, availability and activity in physiological and pathological circumstances.

Indexed as

Amino Acid MotifsProtein ConformationActivinsAmino Acid SequenceGene Expression RegulationGranulocyte-Macrophage Colony-Stimulating FactorHeparan SulfateHumansInhibin-beta SubunitsModels, MolecularPhorbol EstersProtein BindingProtein IsoformsTHP-1 CellsU937 Cellsactivin AActivinsGranulocyte-Macrophage Colony-Stimulating FactorHeparan Sulfateinhibin beta A subunitInhibin-beta SubunitsPhorbol EstersProtein Isoforms

Identifiers

PMID31536599
PMCPMC6752817
OpenAlexW2973755162

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.