Evidence map›Paper›PMID 31535972›Full record

ArticleeLife2019

Proximity labeling of protein complexes and cell-type-specific organellar proteomes in

Andrea Mair, Shou-Ling Xu, Tess C Branon, Alice Y Ting, Dominique C Bergmann

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 144 papers.

0numbers the graph read from it
0cells of the map it votes in
144citing papers in PubMed
12.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

144 citing papers in PubMed, 282 citations in OpenAlex.

  1. Article
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  4. CDK8 phosphorylation of DELLA limits Mediator recruitment in gibberellin signaling.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  12. CabioRxiv : the preprint server for biology · 2026
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  20. TheProceedings of the National Academy of Sciences of the United States of America · 2026
    Article

84 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Andrea MairDepartment of Biology, Stanford University, Stanford, United States.ORCID https://orcid.org/0000-0002-2492-4318
Shou-Ling XuDepartment of Plant Biology, Carnegie Institution for Science, Stanford, United States.ORCID https://orcid.org/0000-0002-6741-9506
Tess C BranonDepartment of Biology, Stanford University, Stanford, United States.
Alice Y TingDepartment of Biology, Stanford University, Stanford, United States.ORCID https://orcid.org/0000-0002-8277-5226
Dominique C BergmannDepartment of Biology, Stanford University, Stanford, United States.ORCID https://orcid.org/0000-0003-0873-3543
Howard Hughes Medical Institute · USCarnegie Institution for Science · USChan Zuckerberg Initiative (United States) · USMassachusetts Institute of Technology · US

Funding

Spatially-resolved proteomic mapping of living cellsR01CA186568 · NCI · STANFORD UNIVERSITY · PI TING, ALICE Y · 2013 to 2018
$3.3M
NCI NIH HHS R01 CA186568NIH HHS RO1-CA186568
6 · The paper itself

Abstract

Defining specific protein interactions and spatially or temporally restricted local proteomes improves our understanding of all cellular processes, but obtaining such data is challenging, especially for rare proteins, cell types, or events. Proximity labeling enables discovery of protein neighborhoods defining functional complexes and/or organellar protein compositions. Recent technological improvements, namely two highly active biotin ligase variants (TurboID and miniTurbo), allowed us to address two challenging questions in plants: (1) what are in vivo partners of a low abundant key developmental transcription factor and (2) what is the nuclear proteome of a rare cell type? Proteins identified with FAMA-TurboID include known interactors of this stomatal transcription factor and novel proteins that could facilitate its activator and repressor functions. Directing TurboID to stomatal nuclei enabled purification of cell type- and subcellular compartment-specific proteins. Broad tests of TurboID and miniTurbo in

Indexed as

ArabidopsisArabidopsis ProteinsMultiprotein ComplexesOrganellesProteomeStaining and LabelingArabidopsis ProteinsMultiprotein ComplexesProteomeA. thalianabiotin ligaseFAMAguard cellN. benthamiananuclear proteomeplant biologyproximity labeling

Identifiers

PMID31535972
PMCPMC6791687
OpenAlexW2973298828

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.