Evidence map›Paper›PMID 31535015›Full record

ArticleScience advances2019

Deconvolution of transcriptional networks identifies TCF4 as a master regulator in schizophrenia.

Abolfazl Doostparast Torshizi, Chris Armoskus, Hanwen Zhang, Marc P Forrest, Siwei Zhang, Tade Souaiaia, Oleg V Evgrafov, James A Knowles, Jubao Duan, Kai Wang

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 80 citations in OpenAlex.

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  13. MicroRNA-495 Modulates Neuronal Layer Fate Determination by TargetingInternational journal of biological sciences · 2024
    Article
  14. Unraveling the Link between Olfactory Deficits and Neuropsychiatric Disorders.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Abolfazl Doostparast TorshiziRaymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.ORCID 0000-0002-3327-699X
Chris ArmoskusCollege of Medicine, SUNY Downstate Medical Center, Brooklyn, NY 11203, USA.ORCID 0000-0001-5837-0600
Hanwen ZhangCenter for Psychiatric Genetics, North Shore University Health System, Evanston, IL 60201, USA.
Marc P ForrestDepartment of Physiology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.ORCID 0000-0002-9280-7850
Siwei ZhangCenter for Psychiatric Genetics, North Shore University Health System, Evanston, IL 60201, USA.ORCID 0000-0002-1646-063X
Tade SouaiaiaCollege of Medicine, SUNY Downstate Medical Center, Brooklyn, NY 11203, USA.
Oleg V EvgrafovCollege of Medicine, SUNY Downstate Medical Center, Brooklyn, NY 11203, USA.
James A KnowlesCollege of Medicine, SUNY Downstate Medical Center, Brooklyn, NY 11203, USA.ORCID 0000-0002-3307-5741
Jubao DuanCenter for Psychiatric Genetics, North Shore University Health System, Evanston, IL 60201, USA.ORCID 0000-0002-7215-3220
Kai WangRaymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.ORCID 0000-0002-5585-982X
University of Southern California · USNorthShore University HealthSystem · USChildren's Hospital of Philadelphia · USNorthwestern University · US

Funding

Systematic Functional Interpretation of Regulatory Variants in SchizophreniaR01MH106575 · NIMH · ENDEAVOR HEALTH CLINICAL OPERATIONS · PI DUAN, JUBAO · 2016 to 2025
$6.1M
Modeling Alzheimer's disease genetic variants in hiPSCR01AG063175 · NIA · ENDEAVOR HEALTH CLINICAL OPERATIONS · PI DUAN, JUBAO, THINAKARAN, GOPAL · 2019 to 2023
$3.7M
TRANSCRIPTOME SEQUENCING OF NEURONAL CELL LINES FROM PATIENTS WITH SCHIZOPHRENIAR01MH086874 · NIMH · UNIVERSITY OF SOUTHERN CALIFORNIA · PI EVGRAFOV, OLEG V · 2011 to 2015
$3.4M
Integrating epigenomics with DNA breathing dynamics for human non-coding disease variantsR01MH116281 · NIMH · ENDEAVOR HEALTH CLINICAL OPERATIONS · PI ALEXANDROV, BOIAN STOIANOV, DUAN, JUBAO · 2019 to 2023
$3.0M
Integrated variation detection annotation and analysis for high-throughout sequeR01HG006465 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI WANG, KAI · 2012 to 2016
$1.8M
UNDERSTANDING THE FUNCTIONAL IMPACTS OF GENETIC VARIANTS IN MENTAL DISORDERSR01MH108728 · NIMH · UNIVERSITY OF SOUTHERN CALIFORNIA · PI WANG, KAI · 2016 to 2018
$1.2M
Genetic Perturbation of a Schizophrenia Susceptibility Locus in Isogenic Human NeR21MH102685 · NIMH · ENDEAVOR HEALTH CLINICAL OPERATIONS · PI DUAN, JUBAO · 2014 to 2015
$429k
NHGRI NIH HHS R01 HG006465NIA NIH HHS R01 AG063175NIMH NIH HHS R01 MH086874NIMH NIH HHS R01 MH106575NIMH NIH HHS R01 MH108728NIMH NIH HHS R01 MH116281NIMH NIH HHS R21 MH102685
6 · The paper itself

Abstract

Applying tissue-specific deconvolution of transcriptional networks to identify their master regulators (MRs) in neuropsychiatric disorders has been largely unexplored. Here, using two schizophrenia (SCZ) case-control RNA-seq datasets, one on postmortem dorsolateral prefrontal cortex (DLPFC) and another on cultured olfactory neuroepithelium, we deconvolved the transcriptional networks and identified

Indexed as

Gene Regulatory NetworksAdultCase-Control StudiesCells, CulturedGenetic Predisposition to DiseaseHumansInduced Pluripotent Stem CellsMaleNeural Stem CellsNeuroepithelial CellsNeuronsOlfactory MucosaPrefrontal CortexSchizophreniaTranscription Factor 4TCF4 protein, humanTranscription Factor 4

Identifiers

PMID31535015
PMCPMC6739105
OpenAlexW2972615382

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.