Evidence map›Paper›PMID 31534687›Full record

ArticleEcology and evolution2019

DNA metabarcoding adds valuable information for management of biodiversity in roadside stormwater ponds.

Zhenhua Sun, Markus Majaneva, Ekaterina Sokolova, Sebastien Rauch, Sondre Meland, Torbjørn Ekrem

Abstract read
In one paragraph

Article in Ecology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zhenhua SunArchitecture and Civil Engineering, Water Environment Technology, Chalmers University of Technology Gothenburg Sweden.ORCID https://orcid.org/0000-0002-0313-849X
Markus MajanevaDepartment of Natural History Norwegian University of Science and Technology, NTNU University Museum Trondheim Norway.
Ekaterina SokolovaArchitecture and Civil Engineering, Water Environment Technology, Chalmers University of Technology Gothenburg Sweden.
Sebastien RauchArchitecture and Civil Engineering, Water Environment Technology, Chalmers University of Technology Gothenburg Sweden.
Sondre MelandFaculty of Environmental Sciences and Natural Resource Management Norwegian University of Life Sciences Ås Norway.
Torbjørn EkremDepartment of Natural History Norwegian University of Science and Technology, NTNU University Museum Trondheim Norway.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

abstractStormwater ponds are used to compensate for the adverse effects that road runoff might have on the natural environment. Depending on their design and placement, stormwater ponds can act as both refugia and traps for local biodiversity. To evaluate the impact of stormwater ponds on biodiversity, it is critical to use effective and precise methods for identification of life associated with the water body. DNA metabarcoding has recently become a promising tool for identification and assessment of freshwater biodiversity.Using both morphology and DNA metabarcoding, we analyze species richness and biological composition of samples from 12 stormwater ponds and investigate the impact of pond size and pollution levels in the sediments and water column on the macroinvertebrate community structure.DNA metabarcoding captured and identified more than twice the number of taxa compared to morphological identification. The (dis)similarity of macroinvertebrate community composition in different ponds showed that the ponds appear better separated in the results obtained by DNA metabarcoding, but that the explained variation is higher for the results obtained by morphologically identification, since it provides abundance data.The reliance on morphological methods has limited our perception of the aquatic biodiversity in response to anthropogenic stressors, thereby providing inaccurate information for appropriate design and management of stormwater ponds; these drawbacks can be overcome by DNA metabarcoding. OPEN PRACTICES: This article has earned an Open Data Badge for making publicly available the digitally-shareable data necessary to reproduce the reported results. The data is available at https://www.ebi.ac.uk/ena/data/view/PRJEB30841.

Indexed as

DNA metabarcodinghigh throughput sequencingmacroinvertebratespollutantsroad runoffstormwater ponds

Identifiers

PMID31534687
PMCPMC6745668

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.