Evidence map›Paper›PMID 31534160›Full record

ArticleScientific reports2019

Overexpression of VIRE2-INTERACTING PROTEIN2 in Arabidopsis regulates genes involved in Agrobacterium-mediated plant transformation and abiotic stresses.

Vidhyavathi Raman, Ajith Anand, Balaji Vasudevan, Mustafa R Morsy, Bikram D Pant, Hee-Kyung Lee, Yuhong Tang, Kirankumar S Mysore

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Vidhyavathi RamanNoble Research Institute, LLC., Ardmore, Oklahoma, USA.
Ajith AnandNoble Research Institute, LLC., Ardmore, Oklahoma, USA.ORCID http://orcid.org/0000-0002-7123-7158
Balaji VasudevanNoble Research Institute, LLC., Ardmore, Oklahoma, USA.
Mustafa R MorsyNoble Research Institute, LLC., Ardmore, Oklahoma, USA.
Bikram D PantNoble Research Institute, LLC., Ardmore, Oklahoma, USA.
Hee-Kyung LeeNoble Research Institute, LLC., Ardmore, Oklahoma, USA.
Yuhong TangNoble Research Institute, LLC., Ardmore, Oklahoma, USA.
Kirankumar S MysoreNoble Research Institute, LLC., Ardmore, Oklahoma, USA. ksmysore@noble.org.ORCID http://orcid.org/0000-0002-9805-5741
Noble Research Institute · USCorteva (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arabidopsis VIRE2-INTERACTING PROTEIN2 (VIP2) was previously described as a protein with a NOT domain, and Arabidopsis vip2 mutants are recalcitrant to Agrobacterium-mediated root transformation. Here we show that VIP2 is a transcription regulator and the C-terminal NOT2 domain of VIP2 interacts with VirE2. Interestingly, AtVIP2 overexpressor lines in Arabidopsis did not show an improvement in Agrobacterium-mediated stable root transformation, but the transcriptome analysis identified 1,634 differentially expressed genes compared to wild-type. These differentially expressed genes belonged to various functional categories such as membrane proteins, circadian rhythm, signaling, response to stimulus, regulation of plant hypersensitive response, sequence-specific DNA binding transcription factor activity and transcription regulatory region binding. In addition to regulating genes involved in Agrobacterium-mediated plant transformation, AtVIP2 overexpressor line showed differential expression of genes involved in abiotic stresses. The majority of the genes involved in abscisic acid (ABA) response pathway, containing the Abscisic Acid Responsive Element (ABRE) element within their promoters, were down-regulated in AtVIP2 overexpressor lines. Consistent with this observation, AtVIP2 overexpressor lines were more susceptible to ABA and other abiotic stresses. Based on the above findings, we hypothesize that VIP2 not only plays a role in Agrobacterium-mediated plant transformation but also acts as a general transcriptional regulator in plants.

Indexed as

Abscisic AcidAgrobacteriumArabidopsisArabidopsis ProteinsCell NucleusGene Expression ProfilingGene Expression Regulation, PlantPlants, Genetically ModifiedResponse ElementsStress, PhysiologicalTranscription Factors, GeneralAbscisic AcidArabidopsis ProteinsTranscription Factors, GeneralVIP2 protein, Arabidopsis

Identifiers

PMID31534160
PMCPMC6751215
OpenAlexW2973740336

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.