Evidence map›Paper›PMID 31534039›Full record

ArticleJournal of virology2019

Hepatitis C Virus Infection Is Inhibited by a Noncanonical Antiviral Signaling Pathway Targeted by NS3-NS4A.

Christine Vazquez, Chin Yee Tan, Stacy M Horner

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Synthetic RIG-I-Agonist RNA Induces Death of Hepatocellular Carcinoma Cells.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2025
    Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Viruses · 2022
    Review
  10. Signaling from the RNA sensor RIG-I is regulated by ufmylation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Potential for Protein Kinase Pharmacological Regulation inInternational journal of molecular sciences · 2020
    Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Christine VazquezDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, USA.
Chin Yee TanDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, USA.
Stacy M HornerDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, USA stacy.horner@duke.edu.ORCID 0000-0002-9351-7409
Duke University · US

Funding

Defining novel Riplet-activated antiviral innate immune signaling pathwaysR21AI124100 · NIAID · DUKE UNIVERSITY · PI HORNER, STACY MICHELLE · 2016 to 2017
$437k
Innate immune regulation during hepatitis C virus infectionK22AI100935 · NIAID · DUKE UNIVERSITY · PI HORNER, STACY MICHELLE · 2014 to 2015
$269k
NIAID NIH HHS K22 AI100935NIAID NIH HHS R21 AI124100
6 · The paper itself

Abstract

The hepatitis C virus (HCV) NS3-NS4A protease complex is required for viral replication and is the major viral innate immune evasion factor. NS3-NS4A evades antiviral innate immunity by inactivating several proteins, including MAVS, the signaling adaptor for RIG-I and MDA5, and Riplet, an E3 ubiquitin ligase that activates RIG-I. Here, we identified a Tyr-16-Phe (Y16F) change in the NS4A transmembrane domain that prevents NS3-NS4A targeting of Riplet but not MAVS. This Y16F substitution reduces HCV replication in Huh7 cells, but not in Huh-7.5 cells, known to lack RIG-I signaling. Surprisingly, deletion of RIG-I in Huh7 cells did not restore Y16F viral replication. Rather, we found that Huh-7.5 cells lack Riplet expression and that the addition of Riplet to these cells reduced HCV Y16F replication, whereas the addition of Riplet lacking the RING domain restored HCV Y16F replication. In addition, TBK1 inhibition or IRF3 deletion in Huh7 cells was sufficient to restore HCV Y16F replication, and the Y16F protease lacked the ability to prevent IRF3 activation or interferon induction. Taken together, these data reveal that the NS4A Y16 residue regulates a noncanonical Riplet-TBK1-IRF3-dependent, but RIG-I-MAVS-independent, signaling pathway that limits HCV infection.

Indexed as

Adaptor Proteins, Signal TransducingCell Line, TumorDEAD Box Protein 58Gene Knockout TechniquesHEK293 CellsHepacivirusHepatitis CHepatocytesHumansImmune EvasionImmunity, InnateInterferon-Induced Helicase, IFIH1Interferon Regulatory Factor-3Protein Serine-Threonine KinasesReceptors, ImmunologicSerine ProteasesAdaptor Proteins, Signal TransducingDEAD Box Protein 58IFIH1 protein, humanInterferon-Induced Helicase, IFIH1Interferon Regulatory Factor-3IRF3 protein, humanMAVS protein, humanNS3-4A serine protease, Hepatitis C virusProtein Serine-Threonine KinasesReceptors, ImmunologicRIGI protein, humanSerine ProteasesTBK1 protein, humanViral Nonstructural Proteinsantiviral innate immunityHCVimmune evasionMAVSNS3-NS4AproteaseRiplet

Identifiers

PMID31534039
PMCPMC6854490
OpenAlexW2973869873

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.