Evidence map›Paper›PMID 31533196›Full record

ArticlePlant biotechnology journal2020

Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development.

José G Vallarino, Catharina Merchante, José F Sánchez-Sevilla, María Angels de Luis Balaguer, Delphine M Pott, María T Ariza, Ana Casañal, David Posé, Amalia Vioque, Iraida Amaya and 8 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Transcriptional regulation of tomato fruit ripening.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  6. Article
  7. Article
  8. Horticulture research · 2023
    Article
  9. Article
  10. Antioxidants (Basel, Switzerland) · 2022
    Article
  11. Article
  12. Article
  13. Characterization and Identification of a Ripening-Related GeneInternational journal of molecular sciences · 2022
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 3 countries.

José G VallarinoDepartamento de Biología Molecular y Bioquímica. Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Málaga, Spain.
Catharina MerchanteDepartamento de Biología Molecular y Bioquímica. Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Málaga, Spain.
José F Sánchez-SevillaUnidad Asociada IFAPA-CSIC Biotecnología y Mejora en Fresa, Málaga, Spain.
María Angels de Luis BalaguerPlant and Microbial Biology Department, North Carolina State University, Raleigh, NC, USA.
Delphine M PottDepartamento de Biología Molecular y Bioquímica. Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Málaga, Spain.
María T ArizaDepartamento de Biología Molecular y Bioquímica. Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Málaga, Spain.
Ana CasañalDepartamento de Biología Molecular y Bioquímica. Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Málaga, Spain.
David PoséDepartamento de Biología Molecular y Bioquímica. Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Málaga, Spain.
Amalia VioqueDepartamento de Biología Molecular y Bioquímica. Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Málaga, Spain.
Iraida AmayaUnidad Asociada IFAPA-CSIC Biotecnología y Mejora en Fresa, Málaga, Spain.
Lothar WillmitzerMax-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany.
Roberto SolanoDepartmento de Genética Molecular de Plantas, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Científicas (CNB-CSIC), Madrid, Spain.ORCID 0000-0001-5459-2417
Rosangela SozzaniPlant and Microbial Biology Department, North Carolina State University, Raleigh, NC, USA.
Alisdair R FernieMax-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam-Golm, Germany.
Miguel A BotellaDepartamento de Biología Molecular y Bioquímica. Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Málaga, Spain.
James J GiovannoniBoyce Thompson Institute for Plant Research and USDA-ARS, Robert W. Holley Center, Cornell University Campus, Ithaca, NY, USA.
Victoriano ValpuestaDepartamento de Biología Molecular y Bioquímica. Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Málaga, Spain.
Sonia OsorioDepartamento de Biología Molecular y Bioquímica. Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora', Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Málaga, Spain.ORCID 0000-0002-0159-6091
Consejo Superior de Investigaciones Científicas · ESAndalusian Institute of Agricultural and Fisheries Research and Training · ESMax Planck Institute of Molecular Plant Physiology · DENorth Carolina State University · USCornell University · US

Funding

European Research Council ERC-2014-StG638134
6 · The paper itself

Abstract

FaMADS9 is the strawberry (Fragaria x ananassa) gene that exhibits the highest homology to the tomato (Solanum lycopersicum) RIN gene. Transgenic lines were obtained in which FaMADS9 was silenced. The fruits of these lines did not show differences in basic parameters, such as fruit firmness or colour, but exhibited lower Brix values in three of the four independent lines. The gene ontology MapMan category that was most enriched among the differentially expressed genes in the receptacles at the white stage corresponded to the regulation of transcription, including a high percentage of transcription factors and regulatory proteins associated with auxin action. In contrast, the most enriched categories at the red stage were transport, lipid metabolism and cell wall. Metabolomic analysis of the receptacles of the transformed fruits identified significant changes in the content of maltose, galactonic acid-1,4-lactone, proanthocyanidins and flavonols at the green/white stage, while isomaltose, anthocyanins and cuticular wax metabolism were the most affected at the red stage. Among the regulatory genes that were differentially expressed in the transgenic receptacles were several genes previously linked to flavonoid metabolism, such as MYB10, DIV, ZFN1, ZFN2, GT2, and GT5, or associated with the action of hormones, such as abscisic acid, SHP, ASR, GTE7 and SnRK2.7. The inference of a gene regulatory network, based on a dynamic Bayesian approach, among the genes differentially expressed in the transgenic receptacles at the white and red stages, identified the genes KAN1, DIV, ZFN2 and GTE7 as putative targets of FaMADS9. A MADS9-specific CArG box was identified in the promoters of these genes.

Indexed as

Bayes TheoremFragariaFruitGene Expression Regulation, PlantGene SilencingMADS Domain ProteinsMetabolomePlant ProteinsPlants, Genetically ModifiedMADS Domain ProteinsPlant Proteinsfruit ripeningqualitystrawberry

Identifiers

PMID31533196
PMCPMC7061862
OpenAlexW2974098413

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.