Evidence map›Paper›PMID 31533028›Full record

ArticleCell reports2019

RUNX1-ETO Depletion in t(8;21) AML Leads to C/EBPα- and AP-1-Mediated Alterations in Enhancer-Promoter Interaction.

Anetta Ptasinska, Anna Pickin, Salam A Assi, Paulynn Suyin Chin, Luke Ames, Roberto Avellino, Stefan Gröschel, Ruud Delwel, Peter N Cockerill, Cameron S Osborne and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

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  8. [Characteristics of N6-methyladenosine modification patterns in t(8;21) acute myeloid leukemia].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Anetta PtasinskaInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham B152TT, UK.
Anna PickinInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham B152TT, UK.
Salam A AssiInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham B152TT, UK.
Paulynn Suyin ChinInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham B152TT, UK.
Luke AmesInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham B152TT, UK.
Roberto AvellinoDepartment of Hematology, Erasmus University Medical Center, Rotterdam, the Netherlands.
Stefan GröschelDepartment of Hematology, Erasmus University Medical Center, Rotterdam, the Netherlands.
Ruud DelwelDepartment of Hematology, Erasmus University Medical Center, Rotterdam, the Netherlands; Oncode Institute, Erasmus University Medical Center, Rotterdam, the Netherlands.
Peter N CockerillInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham B152TT, UK.
Cameron S OsborneDepartment of Medical & Molecular Genetics, King's College London, London SE1 9RT, UK.
Constanze BoniferInstitute of Cancer and Genomic Sciences, University of Birmingham, Birmingham B152TT, UK. Electronic address: c.bonifer@bham.ac.uk.
University of Birmingham · GBErasmus MC · NLKing's College London · GB

Funding

Worldwide Cancer Research 12-1309
6 · The paper itself

Abstract

Acute myeloid leukemia (AML) is associated with mutations in transcriptional and epigenetic regulator genes impairing myeloid differentiation. The t(8;21)(q22;q22) translocation generates the RUNX1-ETO fusion protein, which interferes with the hematopoietic master regulator RUNX1. We previously showed that the maintenance of t(8;21) AML is dependent on RUNX1-ETO expression. Its depletion causes extensive changes in transcription factor binding, as well as gene expression, and initiates myeloid differentiation. However, how these processes are connected within a gene regulatory network is unclear. To address this question, we performed Promoter-Capture Hi-C assays, with or without RUNX1-ETO depletion and assigned interacting cis-regulatory elements to their respective genes. To construct a RUNX1-ETO-dependent gene regulatory network maintaining AML, we integrated cis-regulatory element interactions with gene expression and transcription factor binding data. This analysis shows that RUNX1-ETO participates in cis-regulatory element interactions. However, differential interactions following RUNX1-ETO depletion are driven by alterations in the binding of RUNX1-ETO-regulated transcription factors.

Indexed as

CCAAT-Enhancer-Binding ProteinsCore Binding Factor Alpha 2 SubunitEnhancer Elements, GeneticGene Expression Regulation, LeukemicLeukemia, Myeloid, AcuteOncogene Proteins, FusionPromoter Regions, GeneticRUNX1 Translocation Partner 1 ProteinTranscription Factor AP-1Translocation, GeneticChromosomes, Human, Pair 21Chromosomes, Human, Pair 8Gene DeletionHumansCCAAT-Enhancer-Binding ProteinsCEBPA protein, humanCore Binding Factor Alpha 2 SubunitOncogene Proteins, FusionRUNX1 protein, humanRUNX1T1 protein, humanRUNX1 Translocation Partner 1 ProteinTranscription Factor AP-1acute myeloid leukemiaAP-1 signaling in acute myeloid leukemiachromatin programmingepigenetic regulationintegrated analysis of high-throughput dataPromoter-Capture Hi-Cpromoter-enhancer interactionsRUNX1-ETOtranscriptional networkstranscription factors

Identifiers

PMID31533028
PMCPMC6899442
OpenAlexW2974320796

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.