ArticlePloS one2019
Evolutionary analysis of six chloroplast genomes from three Persea americana ecological races: Insights into sequence divergences and phylogenetic relationships.
Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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13 citing papers in PubMed, 30 citations in OpenAlex.
- Genomic Diversity of Avocado in the Morogoro Region and Southern Highlands of Tanzania.International journal of molecular sciences · 2026Article
- Whole Genome Resequencing of 205 Avocado Trees Unveils the Genomic Patterns of Racial Divergence in the Americas.International journal of molecular sciences · 2025Article
- Elucidating time divergence and biogeography of Euonymus hamiltonianus complex using complete plastome analysis.Scientific reports · 2025Article
- Comparative analysis of 12 water lily plastid genomes reveals genomic divergence and evolutionary relationships in early flowering plants.Marine life science & technology · 2024Article
- Comparative Analysis of Plastome Sequences of SevenInternational journal of molecular sciences · 2024Article
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- Comparative Analysis of the Complete Chloroplast Genomes of EightLife (Basel, Switzerland) · 2022Article
- Complete chloroplast genome sequence and annotation ofMitochondrial DNA. Part B, Resources · 2022Article
- Comparative Analysis of Chloroplast Genome Structure and Phylogenetic Relationships Among Six Taxa Within the GenusFrontiers in genetics · 2022Article
- Comparative analysis of chloroplast genome structure and molecular dating in Myrtales.BMC plant biology · 2021Article
- The complete chloroplast genome of Gleditsia sinensis and Gleditsia japonica: genome organization, comparative analysis, and development of taxon specific DNA mini-barcodes.Scientific reports · 2020Article
- Inheritance of Rootstock Effects in Avocado (Frontiers in plant science · 2020Article
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Authors and funding
10 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Chloroplasts significantly influence species phylogenies because of their maternal inheritance and the moderate evolutionary rate of their genomes. Avocado, which is a member of the family Lauraceae, has received considerable attention from botanists, likely because of its position as a basal angiosperm. However, there is relatively little avocado genomic information currently available. In this study, six complete avocado chloroplast genomes from three ecological races were assembled to examine the sequence diversity among the three avocado ecological races. A comparative genomic analysis revealed that 515 simple sequence repeat loci and 176 repeats belonging to four other types were polymorphic across the six chloroplast genomes. Three highly variable regions (trnC-GCA-petN, petN-psbM, and petA-psbJ) were identified as highly informative markers. A phylogenetic analysis based on 79 common protein-coding genes indicated that the six examined avocado accessions from three ecological races form a monophyletic clade. The other three genera belonging to the Persea group clustered to form a sister clade with a high bootstrap value. These chloroplast genomes provide important genetic information for future attempts at identifying avocado races and for the related biological research.
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