Evidence map›Paper›PMID 31531820›Full record

ArticleCardiovascular engineering and technology2019

Optimization Framework for Patient-Specific Cardiac Modeling.

Joshua Mineroff, Andrew D McCulloch, David Krummen, Baskar Ganapathysubramanian, Adarsh Krishnamurthy

Abstract read
In one paragraph

Article in Cardiovascular engineering and technology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Parameter subset reduction for patient-specific modelling of arrhythmogenic cardiomyopathy-related mutation carriers in the CircAdapt model.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2020
    Article
  6. Creation and application of virtual patient cohorts of heart models.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2020
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Joshua MineroffDepartment of Mechanical Engineering, Iowa State University, Ames, IA, USA.ORCID 0000-0002-5006-4040
Andrew D McCullochBioengineering and Medicine, University of California, San Diego, La Jolla, CA, USA.
David KrummenDepartment of Medicine (Cardiology), University of California, San Diego, La Jolla, CA, USA.
Baskar GanapathysubramanianDepartment of Mechanical Engineering, Iowa State University, Ames, IA, USA.
Adarsh KrishnamurthyDepartment of Mechanical Engineering, Iowa State University, Ames, IA, USA. adarsh@iastate.edu.

Funding

UC BRAID Center for Accelerated Innovation COVID-19 diagnostic project developmentU54HL119893 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PALAZZOLO, MICHAEL J · 2013 to 2020
$18.3M
National Biomedical Computation Resource - Competitive Revision SupplementP41GM103426 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AMARO, ROMMIE E · 2012 to 2019
$14.0M
The Cardiac Atlas ProjectR01HL121754 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MCCULLOCH, ANDREW D., OMENS, JEFFREY H. · 2014 to 2023
$5.0M
Precision Cardiac CT: Development of a Computational Platform for Optimizing ImagingR01HL131753 · NHLBI · DUKE UNIVERSITY · PI SAMEI, EHSAN, SEGARS, WILLIAM P · 2017 to 2020
$2.7M
Systems Biology of Hypertrophic Heart Disease from Molecular Pathways to Organ SystemR01HL137100 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MCCULLOCH, ANDREW D. · 2017 to 2020
$2.0M
NHLBI NIH HHS R01 HL121754NHLBI NIH HHS R01 HL131753NHLBI NIH HHS R01 HL137100NHLBI NIH HHS U54 HL119893NIGMS NIH HHS P41 GM103426
6 · The paper itself

Abstract

purposePatient-specific models of the heart can be used to improve the diagnosis of cardiac diseases, but practical application of these models can be impeded by the computational costs and numerical uncertainties of fitting mechanistic models to clinical measurements from individual patients. Reliable and efficient tuning of these models within clinically appropriate error bounds is a requirement for practical deployment in the time-constrained environment of the clinic.

methodsWe developed an optimization framework to tune parameters of patient-specific mechanistic models using routinely-acquired non-invasive patient data more efficiently than manual methods. We employ a hybrid particle swarm and pattern search optimization algorithm, but the framework can be readily adapted to use other optimization algorithms.

resultsWe apply the proposed framework to tune full-cycle lumped parameter circulatory models using clinical data. We show that our framework can be easily adapted to optimize cross-species models by tuning the parameters of the same circulation model to four canine subjects.

conclusionsThis work will facilitate the use of biomechanics and circulatory cardiac models in both clinical and research environments by ameliorating the tedious process of manually fitting the parameters.

Indexed as

Diffusion Tensor ImagingHemodynamicsMagnetic Resonance Imaging, CineModels, CardiovascularPatient-Specific ModelingVentricular Function, LeftAgedAlgorithmsAnimalsBiomechanical PhenomenaCardiac Resynchronization TherapyDogsFinite Element AnalysisHeart FailureHumansImage Interpretation, Computer-AssistedCardiac biomechanicsLumped-parameter circulation modelOptimizationPatient-specific modeling

Identifiers

PMID31531820
PMCPMC6868335

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.