Evidence map›Paper›PMID 31530865›Full record

ArticleScientific reports2019

Comparative transcriptome analysis of the human endocervix and ectocervix during the proliferative and secretory phases of the menstrual cycle.

S Mukhopadhyay, Y Liang, H Hur, G Villegas, G Calenda, A Reis, L Millen, P Barnable, L Mamkina, N Kumar and 3 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Trial
  2. Trial
  3. The HIV Reservoir and Immune Landscape Across the Life Course of Women: Implications for Cure Strategies.American journal of reproductive immunology (New York, N.Y. : 1989) · 2026
    Review
  4. T-Cell Biology in the Female Reproductive Tract: Relevance to HIV Infection.American journal of reproductive immunology (New York, N.Y. : 1989) · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Estradiol inhibits HIV-1Scientific reports · 2022
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

S MukhopadhyayPopulation Council, New York, NY, USA.
Y LiangBioinformatics Program, The Rockefeller University, New York, NY, USA.
H HurBioinformatics Program, The Rockefeller University, New York, NY, USA.
G VillegasPopulation Council, New York, NY, USA.
G CalendaPopulation Council, New York, NY, USA.
A ReisIcahn School of Medicine at Mt. Sinai, New York, NY, USA.
L MillenIcahn School of Medicine at Mt. Sinai, New York, NY, USA.
P BarnablePopulation Council, New York, NY, USA.
L MamkinaPopulation Council, New York, NY, USA.
N KumarPopulation Council, New York, NY, USA.
T KalirIcahn School of Medicine at Mt. Sinai, New York, NY, USA.
R SperlingIcahn School of Medicine at Mt. Sinai, New York, NY, USA.
N TeleshovaPopulation Council, New York, NY, USA. nteleshova@popcouncil.org.
Population Council · USIcahn School of Medicine at Mount Sinai · USRockefeller University · US

Funding

Effect of sex hormones on HIV infection of cervical and rectal mucosal tissueR01AI110370 · NIAID · POPULATION COUNCIL · PI TELESHOVA, NATALIA · 2013 to 2017
$3.3M
NIAID NIH HHS R01 AI110370
6 · The paper itself

Abstract

Despite extensive studies suggesting increased susceptibility to HIV during the secretory phase of the menstrual cycle, the molecular mechanisms involved remain unclear. Our goal was to analyze transcriptomes of the endocervix and ectocervix during the proliferative and secretory phases using RNA sequencing to explore potential molecular signatures of susceptibility to HIV. We identified 202 differentially expressed genes (DEGs) between the proliferative and secretory phases of the cycle in the endocervix (adjusted p < 0.05). The biofunctions and pathways analysis of DEGs revealed that cellular assembly and epithelial barrier function in the proliferative phase and inflammatory response/cellular movement in the secretory phase were among the top biofunctions and pathways. The gene set enrichment analysis of ranked DEGs (score = log fold change/p value) in the endocervix and ectocervix revealed that (i) unstimulated/not activated immune cells gene sets positively correlated with the proliferative phase and negatively correlated with the secretory phase in both tissues, (ii) IFNγ and IFNα response gene sets positively correlated with the proliferative phase in the ectocervix, (iii) HIV restrictive Wnt/β-catenin signaling pathway negatively correlated with the secretory phase in the endocervix. Our data show menstrual cycle phase-associated changes in both endocervix and ectocervix, which may modulate susceptibility to HIV.

Indexed as

Gene Expression ProfilingTranscriptomeCervix UteriComputational BiologyEndometriumFemaleFollicular PhaseGene OntologyGene Regulatory NetworksHumansLuteal PhaseSignal Transduction

Identifiers

PMID31530865
PMCPMC6749057
OpenAlexW2973656438

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.