Evidence map›Paper›PMID 31530853›Full record

ArticleScientific reports2019

Horizontal and vertical integrative analysis methods for mental disorders omics data.

Shuaichao Wang, Xingjie Shi, Mengyun Wu, Shuangge Ma

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Transfer Learning for High-Dimensional Linear Regression: Prediction, Estimation and Minimax Optimality.Journal of the Royal Statistical Society. Series B, Statistical methodology · 2022
    Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shuaichao WangSJTU-Yale Joint Center for Biostatistics, Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China.
Xingjie ShiSchool of Economics, Nanjing University of Finance and Economics, Nanjing, 210046, China.
Mengyun WuSchool of Statistics and Management, Shanghai University of Finance and Economics, Shanghai, 200433, China. wu.mengyun@mail.shufe.edu.cn.
Shuangge MaDepartment of Biostatistics, Yale University, New Haven, CT, 06520, USA. shuangge.ma@yale.edu.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Novel methods for identifying genetic interactions in cancer prognosisR01CA204120 · NCI · YALE UNIVERSITY · PI Shuangge Ma · 2016 to 2026
$3.5M
Assisted Network-based Analysis of Cancer Gene Expression StudiesR03CA216017 · NCI · YALE UNIVERSITY · PI MA, SHUANGGE · 2017 to 2018
$168k
NCATS NIH HHS UL1 TR001863NCI NIH HHS R01 CA204120NCI NIH HHS R03 CA216017
6 · The paper itself

Abstract

In recent biomedical studies, omics profiling has been extensively conducted on various types of mental disorders. In most of the existing analyses, a single type of mental disorder and a single type of omics measurement are analyzed. In the study of other complex diseases, integrative analysis, both vertical and horizontal integration, has been conducted and shown to bring significantly new insights into disease etiology, progression, biomarkers, and treatment. In this article, we showcase the applicability of integrative analysis to mental disorders. In particular, the horizontal integration of bipolar disorder and schizophrenia and the vertical integration of gene expression and copy number variation data are conducted. The analysis is based on the sparse principal component analysis, penalization, and other advanced statistical techniques. In data analysis, integration leads to biologically sensible findings, including the disease-related gene expressions, copy number variations, and their associations, which differ from the "benchmark" analysis. Overall, this study suggests the potential of integrative analysis in mental disorder research.

Indexed as

DNA Copy Number VariationsGene Expression RegulationBiomarkersComputational BiologyComputer SimulationHumansMental DisordersSoftwareBiomarkers

Identifiers

PMID31530853
PMCPMC6748966

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.