Evidence map›Paper›PMID 31530468›Full record

ArticleVaccine2019

Diversity of Rotavirus Strains Circulating in Botswana before and after introduction of the Monovalent Rotavirus Vaccine.

M Mokomane, M D Esona, M D Bowen, J E Tate, A P Steenhoff, K Lechiile, S Gaseitsiwe, L M Seheri, N B Magagula, G Weldegebriel and 5 more

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in Vaccine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

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  14. Prevalence ofThe Pan African medical journal · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 6 countries.

M MokomaneDepartment of Medical Laboratory Science, Faculty of Health Sciences, University of Botswana, Gaborone, Botswana; Botswana National Health Laboratory, Gaborone, Botswana. Electronic address: mbafana@gov.bw.
M D EsonaCenters for Disease Control and Prevention, Atlanta, GA, USA.
M D BowenCenters for Disease Control and Prevention, Atlanta, GA, USA.
J E TateCenters for Disease Control and Prevention, Atlanta, GA, USA.
A P SteenhoffThe Children's Hospital of Philadelphia, USA.
K LechiileBotswana-UPenn Partnership, Gaborone, Botswana.
S GaseitsiweBotswana-Harvard AIDS Institute Partnership, Gaborone, Botswana.
L M SeheriWHO Regional Rotavirus Reference Laboratory, Diarrhoeal Pathogens Research Unit, Sefako Makgatho Health Sciences University, South Africa.
N B MagagulaWHO Regional Rotavirus Reference Laboratory, Diarrhoeal Pathogens Research Unit, Sefako Makgatho Health Sciences University, South Africa.
G WeldegebrielWHO IST East and Southern Africa, Harare, Zimbabwe.
J M PernicaMcMaster University, Hamilton, Canada.
J M MwendaAfrican Rotavirus Surveillance Network, Immunization, Vaccines and Development Cluster, WHO African Regional Office, Brazzaville, Congo.
I KasvosveBotswana National Health Laboratory, Gaborone, Botswana.
U D ParasharCenters for Disease Control and Prevention, Atlanta, GA, USA.
D M GoldfarbUniversity of British Columbia, Vancouver, Canada.
Centers for Disease Control and Prevention · USSefako Makgatho Health Sciences University · ZABotswana Harvard AIDS Institute Partnership · BWBotswana Open University · BWChildren's Hospital of Philadelphia · USMcMaster University · CAUniversity of Botswana · BWUniversity of British Columbia · CAWorld Health Organization Regional Office for Africa · CGWorld Health Organization - Zimbabwe · ZW

Funding

Intramural CDC HHS CC999999World Health Organization 001
6 · The paper itself

Abstract

backgroundGlobally, rotavirus is the leading cause of acute gastroenteritis (AGE) in children aged <5 years. Botswana introduced the monovalent rotavirus vaccine (Rotarix) in July 2012. To study the impact of this vaccine on rotavirus genotypes circulating in Botswana, a comparison of the genotypes pre-vaccination (2011-2012) and post-vaccination (2013-2018) periods was conducted. SUBJECTS AND

methodsResidual samples from 284 children <5 years of age that tested positive for rotavirus by enzyme immunoassay were genotyped. One hundred and five samples were from the pre-vaccination period and 179 were from the post-vaccination period. Genotyping was performed using two multiplexed one-step reverse transcription polymerase chain reaction (RT-PCR) assays for the amplification and genotyping of rotavirus VP7 (G) and VP4 (P) genes.

resultsPrior to vaccine introduction, the predominant rotavirus circulating genotypes were G9P[8] (n = 63, 60%) and G1P[8] (n = 22, 21%). During the vaccine period, G2P[4] was the predominant genotype (n = 49, 28%), followed by G9P[8] (n = 40, 22%) and G1P[8] (n = 33, 18.5%). There was a significant decline in the prevalence of G9P[8] (p = 0.001) in the post-vaccination period. There was also a notable decline in G1P[8]. A spike in G2P[4] was observed in 2013, one year post-vaccine introduction. Rotavirus strain G3P[4] (n = 8) was only detected in the post-vaccine introduction period. In 2018 there was a marked increase in genotype G3P[8] (p = 0.0003).

conclusionsThe distribution of circulating rotavirus genotypes in Botswana changed after vaccine implementation. Further studies are needed to examine whether these changes are related to vaccination or simply represent natural secular variation.

Indexed as

Genetic VariationImmunization ProgramsAntigens, ViralBotswanaChild, PreschoolFecesFemaleGastroenteritisGenotypeHumansInfantInfant, NewbornMalePhylogenyRNA, ViralRotavirusAntigens, ViralRIX4414 vaccineRNA, ViralRotavirus VaccinesVaccines, AttenuatedAcute gastroenteritisBotswanaG3P[8] genotypeMultiplexed one-step genotypingRotarix

Identifiers

PMID31530468
PMCPMC12001284
OpenAlexW2972796414

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.