Evidence map›Paper›PMID 31529025›Full record

ArticleGenome biology and evolution2019

Genetics of Adaptation of the Ascomycetous Fungus Podospora anserina to Submerged Cultivation.

Olga A Kudryavtseva, Ksenia R Safina, Olga A Vakhrusheva, Maria D Logacheva, Aleksey A Penin, Tatiana V Neretina, Viktoria N Moskalenko, Elena S Glagoleva, Georgii A Bazykin, Alexey S Kondrashov

Abstract read
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Dynamics ofInternational journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Olga A KudryavtsevaDepartment of Mycology and Phycology, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia.
Ksenia R SafinaSkolkovo Institute of Science and Technology, Moscow, Russia.
Olga A VakhrushevaSkolkovo Institute of Science and Technology, Moscow, Russia.
Maria D LogachevaSkolkovo Institute of Science and Technology, Moscow, Russia.
Aleksey A PeninInstitute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia.
Tatiana V NeretinaInstitute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia.
Viktoria N MoskalenkoZoological Museum, Lomonosov Moscow State University, Moscow, Russia.
Elena S GlagolevaDepartment of Plant Physiology, Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia.
Georgii A BazykinSkolkovo Institute of Science and Technology, Moscow, Russia.
Alexey S KondrashovBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Podospora anserina is a model ascomycetous fungus which shows pronounced phenotypic senescence when grown on solid medium but possesses unlimited lifespan under submerged cultivation. In order to study the genetic aspects of adaptation of P. anserina to submerged cultivation, we initiated a long-term evolution experiment. In the course of the first 4 years of the experiment, 125 single-nucleotide substitutions and 23 short indels were fixed in eight independently evolving populations. Six proteins that affect fungal growth and development evolved in more than one population; in particular, in the G-protein alpha subunit FadA, new alleles fixed in seven out of eight experimental populations, and these fixations affected just four amino acid sites, which is an unprecedented level of parallelism in experimental evolution. Parallel evolution at the level of genes and pathways, an excess of nonsense and missense substitutions, and an elevated conservation of proteins and their sites where the changes occurred suggest that many of the observed fixations were adaptive and driven by positive selection.

Indexed as

Evolution, MolecularAllelesFungal ProteinsGenetic VariationGenome, FungalINDEL MutationMycologyPhenotypePodosporaFungal Proteinsadaptationexperimental evolutionPodospora anserinapositive selectionsubmerged cultivation

Identifiers

PMID31529025
PMCPMC6786475

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.