Evidence map›Paper›PMID 31528506›Full record

ArticlePeerJ2019

Comparative transcriptome analysis of panicle development under heat stress in two rice (

Yaliang Wang, Yikai Zhang, Qiang Zhang, Yongtao Cui, Jing Xiang, Huizhe Chen, Guohui Hu, Yanhua Chen, Xiaodan Wang, Defeng Zhu and 1 more

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Integrating physiological and multi-omics methods to elucidate heat stress tolerance for sustainable rice production.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Comparative physiological and transcriptomic analysis of sesame cultivars with different tolerance responses to heat stress.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. TheInternational journal of molecular sciences · 2021
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Yaliang Wang *State Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
Yikai Zhang *State Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
Qiang ZhangState Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
Yongtao CuiState Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
Jing XiangState Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
Huizhe ChenState Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
Guohui HuState Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
Yanhua ChenState Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
Xiaodan WangState Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
Defeng ZhuState Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
Yuping ZhangState Key Laboratory of Rice Biology, China National Rice Research Inistitute, Hangzhou, Zhejiang, China.
China National Rice Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heat stress inhibits rice panicle development and reduces the spikelet number per panicle. This study investigated the mechanism involved in heat-induced damage to panicle development and spikelet formation in rice cultivars that differ in heat tolerance. Transcriptome data from developing panicles grown at 40 °C or 32 °C were compared for two rice cultivars: heat-tolerant Huanghuazhan and heat-susceptible IR36. Of the differentially expressed genes (DEGs), 4,070 heat stress-responsive genes were identified, including 1,688 heat-resistant-cultivar-related genes (RHR), 707 heat-susceptible-cultivar-related genes (SHR), and 1,675 common heat stress-responsive genes (CHR). A Gene Ontology (GO) analysis showed that the DEGs in the RHR category were significantly enriched in 54 gene ontology terms, some of which improved heat tolerance, including those in the WRKY, HD-ZIP, ERF, and MADS transcription factor families. A Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that the DEGs in the RHR and SHR categories were enriched in 15 and 11 significant metabolic pathways, respectively. Improved signal transduction capabilities of endogenous hormones under high temperature seemed to promote heat tolerance, while impaired starch and sucrose metabolism under high temperature might have inhibited young panicle development. Our transcriptome analysis provides insights into the different molecular mechanisms of heat stress tolerance in developing rice.

Indexed as

Heat stressPanicle developmetRiceTranscriptome analysis

Identifiers

PMID31528506
PMCPMC6717657
OpenAlexW2970711509

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.