Evidence map›Paper›PMID 31527803›Full record

ArticleNature neuroscience2019

A repeated molecular architecture across thalamic pathways.

James W Phillips, Anton Schulmann, Erina Hara, Johan Winnubst, Chenghao Liu, Vera Valakh, Lihua Wang, Brenda C Shields, Wyatt Korff, Jayaram Chandrashekar and 5 more

Erratum issuedAbstract read
In one paragraph

Article in Nature neuroscience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 118 papers.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Modern Mining: The Role of Single-cell RNA Sequencing in Advancing Neuroscience Research.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  7. Two gradients, one cortex.National science review · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

James W Phillips *HHMI Janelia Research Campus, Ashburn, VA, USA. jameswphillips91@gmail.com.ORCID http://orcid.org/0000-0003-4917-9964
Anton Schulmann *HHMI Janelia Research Campus, Ashburn, VA, USA.
Erina HaraHHMI Janelia Research Campus, Ashburn, VA, USA.
Johan WinnubstHHMI Janelia Research Campus, Ashburn, VA, USA.
Chenghao LiuBrandeis University, Waltham, MA, USA.ORCID http://orcid.org/0000-0001-6041-7586
Vera ValakhBrandeis University, Waltham, MA, USA.
Lihua WangHHMI Janelia Research Campus, Ashburn, VA, USA.
Brenda C ShieldsHHMI Janelia Research Campus, Ashburn, VA, USA.
Wyatt KorffHHMI Janelia Research Campus, Ashburn, VA, USA.
Jayaram ChandrashekarHHMI Janelia Research Campus, Ashburn, VA, USA.
Andrew L LemireHHMI Janelia Research Campus, Ashburn, VA, USA.
Brett MenshHHMI Janelia Research Campus, Ashburn, VA, USA.
Joshua T DudmanHHMI Janelia Research Campus, Ashburn, VA, USA.ORCID http://orcid.org/0000-0002-4436-1057
Sacha B NelsonHHMI Janelia Research Campus, Ashburn, VA, USA. nelson@brandeis.edu.ORCID http://orcid.org/0000-0002-0108-8599
Adam W HantmanHHMI Janelia Research Campus, Ashburn, VA, USA. hantmana@janelia.hhmi.org.ORCID http://orcid.org/0000-0002-6563-1423

Funding

Quantitative Neuroscience: Tools for Bridging Levels of AnalysisT32NS007292 · NINDS · BRANDEIS UNIVERSITY · PI GINA G TURRIGIANO · 1986 to 2026
$12.7M
SETTING FIRING RATE SET POINTS IN NEOCORTICAL PYRAMIDAL NEURONSP01NS079419 · NINDS · BRANDEIS UNIVERSITY · PI TURRIGIANO, GINA G · 2013 to 2017
$6.2M
Combining genetics, genomics, and anatomy to classify cell types across mammalsU01MH105949 · NIMH · BRANDEIS UNIVERSITY · PI BEJERANO, GILL, LOIS, CARLOS · 2014 to 2016
$3.4M
Undergraduate and Graduate Training in Computational Neuroscience R90DA033463 · NIDA · BRANDEIS UNIVERSITY · PI MILLER, PAUL · 2011 to 2020
$2.0M
Maladaptive compensatory plasticity in developing cortical circuitsR56NS109916 · NINDS · BRANDEIS UNIVERSITY · PI NELSON, SACHA B · 2019 to 2019
$406k
NIDA NIH HHS R90 DA033463NIMH NIH HHS U01 MH105949NINDS NIH HHS P01 NS079419NINDS NIH HHS R56 NS109916NINDS NIH HHS T32 NS007292
6 · The paper itself

Abstract

The thalamus is the central communication hub of the forebrain and provides the cerebral cortex with inputs from sensory organs, subcortical systems and the cortex itself. Multiple thalamic regions send convergent information to each cortical region, but the organizational logic of thalamic projections has remained elusive. Through comprehensive transcriptional analyses of retrogradely labeled thalamic neurons in adult mice, we identify three major profiles of thalamic pathways. These profiles exist along a continuum that is repeated across all major projection systems, such as those for vision, motor control and cognition. The largest component of gene expression variation in the mouse thalamus is topographically organized, with features conserved in humans. Transcriptional differences between these thalamic neuronal identities are tied to cellular features that are critical for function, such as axonal morphology and membrane properties. Molecular profiling therefore reveals covariation in the properties of thalamic pathways serving all major input modalities and output targets, thus establishing a molecular framework for understanding the thalamus.

Indexed as

Action PotentialsAnimalsAtlases as TopicCerebral CortexHumansMiceMice, TransgenicNeural PathwaysThalamusTranscriptome

Identifiers

PMID31527803
PMCPMC6819258

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.