Evidence map›Paper›PMID 31527793›Full record

ArticleNature microbiology2019

Enterovirus pathogenesis requires the host methyltransferase SETD3.

Jonathan Diep, Yaw Shin Ooi, Alex W Wilkinson, Christine E Peters, Eileen Foy, Jeffrey R Johnson, James Zengel, Siyuan Ding, Kuo-Feng Weng, Orly Laufman and 14 more

Abstract read
In one paragraph

Article in Nature microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 86 citations in OpenAlex.

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  15. An efficientJournal of virology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 6 institutions in 1 country.

Jonathan Diep *Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Yaw Shin Ooi *Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-9014-1365
Alex W Wilkinson *Department of Biology, Stanford University, Stanford, CA, USA.
Christine E PetersDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Eileen FoyDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA.
Jeffrey R JohnsonDepartment of Cellular Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.
James ZengelDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Siyuan DingDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Kuo-Feng WengDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Orly LaufmanDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA.
Gwendolyn JangDepartment of Cellular Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.
Jiewei XuDepartment of Cellular Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.
Tracy YoungDepartment of Cellular Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.
Erik VerschuerenDepartment of Cellular Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.
Kristi J KoblukDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Joshua E EliasChan Zuckerberg Biohub, Mass Spectrometry Platform, Stanford, CA, USA.
Peter SarnowDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Harry B GreenbergDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA.
Ruth HüttenhainDepartment of Cellular Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA.
Claude M NagamineDepartment of Comparative Medicine, Stanford University School of Medicine, Stanford, CA, USA.
Raul AndinoDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA. raul.andino@ucsf.edu.ORCID http://orcid.org/0000-0001-5503-9349
Nevan J KroganDepartment of Cellular Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, USA. nevan.krogan@gladstone.ucsf.edu.ORCID http://orcid.org/0000-0003-4902-337X
Or GozaniDepartment of Biology, Stanford University, Stanford, CA, USA. ogozani@stanford.edu.ORCID http://orcid.org/0000-0002-1365-4463
Jan E CaretteDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA. carette@stanford.edu.ORCID http://orcid.org/0000-0002-5187-8070
Stanford University · USGladstone Institutes · USUniversity of California, San Francisco · USStanford Medicine · USVA Palo Alto Health Care System · USChan Zuckerberg Initiative (United States) · US

Funding

X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
Translational Incubator CoreU19AI109662 · NIAID · STANFORD UNIVERSITY · PI GLENN, JEFFREY S · 2014 to 2019
$28.6M
Rewiring Therapeutic Cells: User-Controlled T Cells and Stem CellsP50GM081879 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2010 to 2017
$19.0M
X-ray Screening and Rapid Structure DeterminationP50AI150476 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI EMERMAN, MICHAEL · 2019 to 2021
$14.4M
Unbiased Functional Characterization of Enterovirus-Host InteractionsP01AI091575 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KROGAN, NEVAN J · 2011 to 2015
$10.5M
RNA PROTEIN INTERACTIONS IN POLIOVIRUS REPLICATIONR01AI040085 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDINO, RAUL · 1998 to 2019
$5.8M
VIRAL GASTROENTERITIS--BASIS OF PROTECTION AND VIRULENCER01AI021362 · NIAID · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 1989 to 2014
$5.4M
Function of PHD Domain Proteins in Chromatin RegulationR01GM079641 · NIGMS · STANFORD UNIVERSITY · PI GOZANI, OR P. · 2007 to 2020
$4.5M
Genetic screens to find critical host factors for SARS-CoV-2 infectionR01AI140186 · NIAID · STANFORD UNIVERSITY · PI CARETTE, JAN E · 2019 to 2023
$2.3M
Genetic approaches to discover host factors critical to dengue virus infectionDP2AI104557 · NIAID · STANFORD UNIVERSITY · PI CARETTE, JAN E · 2012 to 2012
$2.3M
Host determinants of adeno-associated virus entry and traffickingR01AI130123 · NIAID · STANFORD UNIVERSITY · PI CARETTE, JAN E · 2018 to 2022
$2.0M
Host Genes Critical for Flavivirus InfectionR01AI141970 · NIAID · STANFORD UNIVERSITY · PI CARETTE, JAN E · 2019 to 2023
$2.0M
BLRD VA I01 BX000158NIAID NIH HHS DP2 AI104557NIAID NIH HHS K99 AI135031NIAID NIH HHS P01 AI091575NIAID NIH HHS P50 AI150476NIAID NIH HHS R00 AI135031NIAID NIH HHS R01 AI021362NIAID NIH HHS R01 AI040085NIAID NIH HHS R01 AI130123NIAID NIH HHS R01 AI140186NIAID NIH HHS R01 AI141970NIAID NIH HHS R37 AI021362NIAID NIH HHS R56 AI021362NIAID NIH HHS U19 AI109662NIGMS NIH HHS P50 GM081879NIGMS NIH HHS P50 GM082250NIGMS NIH HHS R01 GM079641
6 · The paper itself

Abstract

Enteroviruses (EVs) comprise a large genus of positive-sense, single-stranded RNA viruses whose members cause a number of important and widespread human diseases, including poliomyelitis, myocarditis, acute flaccid myelitis and the common cold. How EVs co-opt cellular functions to promote replication and spread is incompletely understood. Here, using genome-scale CRISPR screens, we identify the actin histidine methyltransferase SET domain containing 3 (SETD3) as critically important for viral infection by a broad panel of EVs, including rhinoviruses and non-polio EVs increasingly linked to severe neurological disease such as acute flaccid myelitis (EV-D68) and viral encephalitis (EV-A71). We show that cytosolic SETD3, independent of its methylation activity, is required for the RNA replication step in the viral life cycle. Using quantitative affinity purification-mass spectrometry, we show that SETD3 specifically interacts with the viral 2A protease of multiple enteroviral species, and we map the residues in 2A that mediate this interaction. 2A mutants that retain protease activity but are unable to interact with SETD3 are severely compromised in RNA replication. These data suggest a role of the viral 2A protein in RNA replication beyond facilitating proteolytic cleavage. Finally, we show that SETD3 is essential for in vivo replication and pathogenesis in multiple mouse models for EV infection, including CV-A10, EV-A71 and EV-D68. Our results reveal a crucial role of a host protein in viral pathogenesis, and suggest targeting SETD3 as a potential mechanism for controlling viral infections.

Indexed as

AnimalsCentral Nervous System Viral DiseasesCRISPR-Cas SystemsDisease Models, AnimalEncephalitis, ViralEnterovirusEnterovirus InfectionsHistone MethyltransferasesMethyltransferasesMiceMyelitisNeuromuscular DiseasesProteolysisViral ProteinsVirus ReplicationHistone MethyltransferasesMethyltransferasesSetd3 protein, mouseViral Proteinsvirus protein 2A

Identifiers

PMID31527793
PMCPMC6879830
OpenAlexW2973763909

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.