Evidence map›Paper›PMID 31527679›Full record

ArticleNature communications2019

A phyB-PIF1-SPA1 kinase regulatory complex promotes photomorphogenesis in Arabidopsis.

Inyup Paik, Fulu Chen, Vinh Ngoc Pham, Ling Zhu, Jeong-Il Kim, Enamul Huq

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
16.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. International journal of molecular sciences · 2026
    Article
  8. Review
  9. Growth, phytohormone and transcriptome responses ofFrontiers in plant science · 2026
    Article
  10. Review
  11. Plants (Basel, Switzerland) · 2025
    Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. COP1 controls light-dependent chromatin remodeling.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  19. Article
  20. Characterization of PIF4 Phosphorylation by SPA1.Methods in molecular biology (Clifton, N.J.) · 2024
    Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Inyup PaikDepartment of Molecular Biosciences and The Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX, 78712, USA.ORCID http://orcid.org/0000-0001-5938-6380
Fulu ChenDepartment of Molecular Biosciences and The Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX, 78712, USA.ORCID http://orcid.org/0000-0002-9856-0027
Vinh Ngoc PhamDepartment of Molecular Biosciences and The Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX, 78712, USA.
Ling ZhuDepartment of Molecular Biosciences and The Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX, 78712, USA.ORCID http://orcid.org/0000-0003-1303-0930
Jeong-Il KimDepartment of Molecular Biosciences and The Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX, 78712, USA.ORCID http://orcid.org/0000-0003-4177-4048
Enamul HuqDepartment of Molecular Biosciences and The Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, TX, 78712, USA. huq@austin.utexas.edu.ORCID http://orcid.org/0000-0001-7692-5139
The University of Texas at Austin · USChonnam National University · KRInstitute of Crop Sciences · CNSyngenta (United States) · US

Funding

Phytochrome-mediated light signaling in plantsR01GM114297 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI HUQ, ENAMUL · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM114297
6 · The paper itself

Abstract

CONSTITUTIVELY PHOTOMORPHOGENIC1 (COP1) is a highly conserved E3 ubiquitin ligase from plants to animals and acts as a central repressor of photomorphogenesis in plants. SUPPRESSOR OF PHYA-105 1 family members (SPA1-SPA4) directly interact with COP1 and enhance COP1 activity. Despite the presence of a kinase domain at the N-terminus, no COP1-independent role of SPA proteins has been reported. Here we show that SPA1 acts as a serine/threonine kinase and directly phosphorylates PIF1 in vitro and in vivo. SPAs are necessary for the light-induced phosphorylation, ubiquitination and subsequent degradation of PIF1. Moreover, the red/far-red light photoreceptor phyB interacts with SPA1 through its C-terminus and enhances the recruitment of PIF1 for phosphorylation. These data provide a mechanistic view on how the COP1-SPA complexes serve as an example of a cognate kinase-E3 ligase complex that selectively triggers rapid phosphorylation and removal of its substrates, and how phyB modulates this process to promote photomorphogenesis.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCell Cycle ProteinsGene Expression Regulation, PlantLightPhytochrome BProtein BindingProtein DomainsArabidopsis ProteinsAt2g20180 protein, ArabidopsisBasic Helix-Loop-Helix ProteinsCell Cycle ProteinsPHYB protein, ArabidopsisPhytochrome BSPA1 protein, Arabidopsis

Identifiers

PMID31527679
PMCPMC6746701
OpenAlexW2973470729

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.