Evidence map›Paper›PMID 31527652›Full record

ArticleScientific reports2019

Prediction of MAYV peptide antigens for immunodiagnostic tests by immunoinformatics and molecular dynamics simulations.

Roger Luiz Rodrigues, Gabriela De Lima Menezes, Marielena Vogel Saivish, Vivaldo Gomes Da Costa, Maristela Pereira, Marcos Lázaro Moreli, Roosevelt Alves Da Silva

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Roger Luiz RodriguesUniversidade Federal de Goiás, Laboratório de Virologia, Jataí, GO, 75801-615, Brazil.ORCID http://orcid.org/0000-0001-8042-4636
Gabriela De Lima MenezesUniversidade Federal de Goiás, Núcleo Colaborativo de BioSistemas, Jataí, GO, 75801-615, Brazil.ORCID http://orcid.org/0000-0002-8944-8148
Marielena Vogel SaivishUniversidade Federal de Goiás, Laboratório de Virologia, Jataí, GO, 75801-615, Brazil.
Vivaldo Gomes Da CostaUniversidade de Brasília, Departamento de Biologia Celular, Brasília, DF, 70910-900, Brazil.ORCID http://orcid.org/0000-0002-9359-0198
Maristela PereiraUniversidade Federal de Goiás, Laboratório de Biologia Molecular, Instituto de Ciências Biológicas, Goiânia, GO, 74690-900, Brazil.
Marcos Lázaro MoreliUniversidade Federal de Goiás, Laboratório de Virologia, Jataí, GO, 75801-615, Brazil. marcos_moreli@ufg.br.
Roosevelt Alves Da SilvaUniversidade Federal de Goiás, Núcleo Colaborativo de BioSistemas, Jataí, GO, 75801-615, Brazil. rooseveltfisicaufg@gmail.com.ORCID http://orcid.org/0000-0001-5624-4790
Universidade Federal de Jataí · BRUniversidade Federal de Goiás · BRUniversidade de Brasília · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Mayaro virus is endemic to South America, and the possible involvement of Aedes spp. mosquitoes in its transmission is a risk factor for outbreaks of greater proportions. The virus causes a potentially disabling illness known as Mayaro fever, which is similar to that caused by the chikungunya virus. The cocirculation of both viruses, with their clinical and structural similarities, and the absence of prophylactic and therapeutic measures highlight the need for studies that seek to understand the Mayaro virus. Using approaches in silico, we identified an antigenic and specific epitope (p_MAYV4) in domain A of the E2 glycoprotein of the Mayaro virus. This epitope was theoretically predicted to be stable and exposed on the surface of the protein, where it showed key properties that enable its interaction with neutralizing antibodies. These characteristics make it an interesting target for the development of immunodiagnostic platforms. Molecular dynamics simulation-based structural analysis showed that the PHE95 residue in the E1 fusion loop region is conserved among Alphavirus family members. PHE95 interacts with the hydrophobic residues of the E2 glycoprotein to form a cage-shaped structure that is critical to assemble and stabilize the E1/E2 heterodimer. These results provide important insights useful for the advancement of diagnostic platforms and the study of therapeutic alternatives.

Indexed as

AedesAlphavirusAlphavirus InfectionsAmino Acid SequenceAnimalsAntigens, ViralEpitopesHumansImmunologic TestsMolecular Docking SimulationMolecular Dynamics SimulationViral Envelope ProteinsAntigens, ViralEpitopesViral Envelope Proteins

Identifiers

PMID31527652
PMCPMC6746749
OpenAlexW2972405990

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.