Evidence map›Paper›PMID 31527520›Full record

ArticleGenes2019

Expression of ZNF695 Transcript Variants in Childhood B-Cell Acute Lymphoblastic Leukemia.

Ricardo De la Rosa, Vanessa Villegas-Ruíz, Marcela Concepción Caballero-Palacios, Eleazar Israel Pérez-López, Chiharu Murata, Martha Zapata-Tarres, Rocio Cárdenas-Cardos, Rogelio Paredes-Aguilera, Roberto Rivera-Luna, Sergio Juárez-Méndez

Open access · goldAbstract read
In one paragraph

Article in Genes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

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  14. Alternative splicing ofOncology letters · 2021
    Review
  15. Article
  16. Alternative splicing of lncRNAs in human diseases.American journal of cancer research · 2021
    Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Ricardo De la RosaExperimental Oncology Laboratory, Research Department, National Institute of Pediatrics, Mexico City 04530, Mexico.
Vanessa Villegas-RuízExperimental Oncology Laboratory, Research Department, National Institute of Pediatrics, Mexico City 04530, Mexico.
Marcela Concepción Caballero-PalaciosExperimental Oncology Laboratory, Research Department, National Institute of Pediatrics, Mexico City 04530, Mexico.
Eleazar Israel Pérez-LópezExperimental Oncology Laboratory, Research Department, National Institute of Pediatrics, Mexico City 04530, Mexico.
Chiharu MurataResearch Methodology Department, National Institute of Pediatrics, Mexico City 04530, Mexico.
Martha Zapata-TarresDepartment of Pediatric Oncology, National Institute of Pediatrics, Mexico City 04530, Mexico.
Rocio Cárdenas-CardosDepartment of Pediatric Oncology, National Institute of Pediatrics, Mexico City 04530, Mexico.
Rogelio Paredes-AguileraDepartment of Hematology, National Institute of Pediatrics, Mexico City 04530, Mexico.
Roberto Rivera-LunaDivision of Pediatric Hem/Oncology, National Institute of Pediatrics, Mexico City 04530, Mexico.
Sergio Juárez-MéndezExperimental Oncology Laboratory, Research Department, National Institute of Pediatrics, Mexico City 04530, Mexico. sjuarezm@pediatria.gob.mx.
Vietnam National Children's Hospital · VN

Funding

Elucidating the protective role of stromal fibrosis to radiation-induced tumor immunityF30CA243233 · NCI · WASHINGTON UNIVERSITY · PI LANDER, VARINTRA EDLYN · 2019 to 2022
$165k
6 · The paper itself

Abstract

B-cell acute lymphoblastic leukemia is the most commonly diagnosed childhood malignancy worldwide; more than 50% of these cases are diagnosed in Mexico. Although the five-year survival rate is >80%, 30% of patients experience relapse with poor prognosis. Cancer-associated gene expression profiles have been identified in several malignancies, and some transcripts have been used to predict disease prognosis. The human transcriptome is incompletely elucidated; moreover, more than 80% of transcripts can be processed via alternative splicing (AS), which increases transcript and protein diversity. The human transcriptome is divided; coding RNA accounts for 2%, and the remaining 98% is noncoding RNA. Noncoding RNA can undergo AS, promoting the diversity of noncoding transcripts. We designed specific primers to amplify previously reported alternative transcript variants of ZNF695 and showed that six ZNF695 transcript variants are co-expressed in cancer cell lines. The amplicons were sequenced and identified. Additionally, we analyzed the expression of these six transcript variants in bone marrow from B-cell acute lymphoblastic leukemia patients and observed that ZNF695 transcript variants one and three were the predominant variants expressed in leukemia. Moreover, our results showed the co-expression of coding and long noncoding RNA. Finally, we observed that long noncoding RNA ZNF695 expression predicted survival rates.

Indexed as

Alternative SplicingBiomarkers, TumorCells, CulturedChildFemaleGene Expression Regulation, NeoplasticHumansMaleMCF-7 CellsNeoplasm ProteinsNuclear ProteinsPrecursor Cell Lymphoblastic Leukemia-LymphomaRNA, Long NoncodingRNA, MessengerBiomarkers, TumorNeoplasm ProteinsNuclear ProteinsRNA, Long NoncodingRNA, MessengerZNF695 protein, humangene expressionleukemialncRNAsZNF695

Identifiers

PMID31527520
PMCPMC6771147
OpenAlexW2973452122

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.