Evidence map›Paper›PMID 31527275›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Structural basis of molecular logic OR in a dual-sensor histidine kinase.

Heewhan Shin, Zhong Ren, Xiaoli Zeng, Sepalika Bandara, Xiaojing Yang

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. A Bright and Dynamic Future in Structural Biology.Advances in experimental medicine and biology · 2026
    Review
  4. Article
  5. Article
  6. Cyanobacteriochromes: A Rainbow of Photoreceptors.Annual review of microbiology · 2024
    Review
  7. Article
  8. Article
  9. Mode of autophosphorylation in bacteriophytochromes RpBphP2 and RpBphP3.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
  10. Towards the Idea of Molecular Brains.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Review
  13. Structural basis of the protochromic green/red photocycle of the chromatic acclimation sensor RcaE.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Article
  15. Crystal structure of a far-red-sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Article
  18. Revealing the origin of multiphasic dynamic behaviors in cyanobacteriochrome.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Heewhan ShinDepartment of Chemistry, The University of Illinois at Chicago, Chicago, IL 60607.
Zhong RenDepartment of Chemistry, The University of Illinois at Chicago, Chicago, IL 60607.ORCID 0000-0001-7098-3127
Xiaoli ZengDepartment of Chemistry, The University of Illinois at Chicago, Chicago, IL 60607.
Sepalika BandaraDepartment of Chemistry, The University of Illinois at Chicago, Chicago, IL 60607.
Xiaojing YangDepartment of Chemistry, The University of Illinois at Chicago, Chicago, IL 60607; xiaojing@uic.edu.ORCID 0000-0003-1394-9189
University of Illinois Chicago · US

Funding

Structures, Dynamics and Signaling Mechanisms of Modular PhotoreceptorsR01EY024363 · NEI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI YANG, XIAOJING · 2014 to 2021
$2.9M
NEI NIH HHS R01 EY024363
6 · The paper itself

Abstract

Signal detection and integration by sensory proteins constitute the critical molecular events as living organisms respond to changes in a complex environment. Many sensory proteins adopt a modular architecture that integrates the perception of distinct chemical or physical signals and the generation of a biological response in the same protein molecule. Currently, how signal perception and integration are achieved in such a modular, often dimeric, framework remains elusive. Here, we report a dynamic crystallography study on the tandem sensor domains of a dual-sensor histidine kinase PPHK (phosphorylation-responsive photosensitive histidine kinase) that operates a molecular logic OR, by which the output kinase activity is modulated by a phosphorylation signal and a light signal. A joint analysis of ∼170 crystallographic datasets probing different signaling states shows remarkable dimer asymmetry as PPHK responds to the input signals and transitions from one state to the other. Supported by mutational data and structural analysis, these direct observations reveal the working mechanics of the molecular logic OR in PPHK, where the light-induced bending of a long signaling helix at the dimer interface is counteracted by the ligand-induced structural changes from a different sensor domain. We propose that the logic OR of PPHK, together with an upstream photoreceptor, implements a "long-pass" red light response distinct from those accomplished by classical phytochromes.

Indexed as

Signal TransductionBacterial ProteinsComputational BiologyComputer SimulationCrystallizationCrystallography, X-RayCyanobacteriaDNA Mutational AnalysisHistidine KinaseLigandsLightLogicModels, MolecularMotionMutationPhosphorylationBacterial ProteinsHistidine KinaseLigandsPhytochromedynamic crystallographymolecular logicphosphorylationphotoreceptorsignal integration

Identifiers

PMID31527275
PMCPMC6778262
OpenAlexW2974166487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.