Evidence map›Paper›PMID 31527229›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Genomic analysis of siderophore β-hydroxylases reveals divergent stereocontrol and expands the condensation domain family.

Zachary L Reitz, Clifford D Hardy, Jaewon Suk, Jean Bouvet, Alison Butler

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
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  10. LCMS-Metabolomic Profiling and Genome Mining ofJournal of natural products · 2024
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  12. New variochelins from soil-isolatedBeilstein journal of organic chemistry · 2024
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  13. Tistrellabactins A and B Are PhotoreactiveJournal of natural products · 2023
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  14. Article
  15. Review
  16. Comparative metabolomic profiling ofFrontiers in chemistry · 2023
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  17. Article
  18. Microbial genomics · 2021
    Article
  19. Biosynthesis and Mechanism of Action of the Cell Wall Targeting Antibiotic Hypeptin.Angewandte Chemie (International ed. in English) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Zachary L ReitzDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106-9510.
Clifford D HardyDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106-9510.
Jaewon SukDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106-9510.
Jean BouvetDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106-9510.
Alison ButlerDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106-9510 butler@chem.ucsb.edu.ORCID 0000-0002-3525-7864
University of California, Santa Barbara · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome mining of biosynthetic pathways streamlines discovery of secondary metabolites but can leave ambiguities in the predicted structures, which must be rectified experimentally. Through coupling the reactivity predicted by biosynthetic gene clusters with verified structures, the origin of the β-hydroxyaspartic acid diastereomers in siderophores is reported herein. Two functional subtypes of nonheme Fe(II)/α-ketoglutarate-dependent aspartyl β-hydroxylases are identified in siderophore biosynthetic gene clusters, which differ in genomic organization-existing either as fused domains (IβH

Indexed as

Aspartic AcidBacteriaBiosynthetic PathwaysChelating AgentsGenome, BacterialGenomicsIronLikelihood FunctionsMixed Function OxygenasesMultigene FamilyPeptide SynthasesPhylogenySiderophoresStereoisomerismSubstrate SpecificityAspartic AcidChelating AgentsIronMixed Function Oxygenasesnon-ribosomal peptide synthasePeptide SynthasesSiderophoresbiosynthesisgenomicshydroxyaspartic acidnonribosomal peptide synthetasesiderophore

Identifiers

PMID31527229
PMCPMC6778253
OpenAlexW2974518325

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.