Evidence map›Paper›PMID 31525183›Full record

ArticlePLoS computational biology2019

Fast and near-optimal monitoring for healthcare acquired infection outbreaks.

Bijaya Adhikari, Bryan Lewis, Anil Vullikanti, José Mauricio Jiménez, B Aditya Prakash

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

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  5. Continually-Adaptive Representation Learning Framework for Time-Sensitive Healthcare Applications.Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Bijaya AdhikariDepartment of Computer Science, Virginia Tech, Blacksburg, Virginia, United States of America.ORCID 0000-0001-8409-8073
Bryan LewisBiocomplexity Institute & Initiative, University of Virginia, Charlottesville, Virginia, United States of America.ORCID 0000-0003-0793-6082
Anil VullikantiBiocomplexity Institute & Initiative, University of Virginia, Charlottesville, Virginia, United States of America.
José Mauricio JiménezDepartment of Systems Engineering, United States Military Academy, West Point, New York, United States of America.
B Aditya PrakashDepartment of Computer Science, Virginia Tech, Blacksburg, Virginia, United States of America.
Biocom · USVirginia Tech · USUnited States Military Academy · US

Funding

Synthetic Information Systems for Better Informing Public Health PolicymakersU01GM070694 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI EUBANK, STEPHEN G, MARATHE, MADHAV VISHNU · 2004 to 2016
$8.6M
Systems Analysis of Social Pathways of Epidemics to Reduce Health DisparitiesR01GM109718 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI MARATHE, ACHLA, VULLIKANTI, ANIL · 2014 to 2022
$3.6M
NIGMS NIH HHS R01 GM109718NIGMS NIH HHS U01 GM070694
6 · The paper itself

Abstract

According to the Centers for Disease Control and Prevention (CDC), one in twenty five hospital patients are infected with at least one healthcare acquired infection (HAI) on any given day. Early detection of possible HAI outbreaks help practitioners implement countermeasures before the infection spreads extensively. Here, we develop an efficient data and model driven method to detect outbreaks with high accuracy. We leverage mechanistic modeling of C. difficile infection, a major HAI disease, to simulate its spread in a hospital wing and design efficient near-optimal algorithms to select people and locations to monitor using an optimization formulation. Results show that our strategy detects up to 95% of "future" C. difficile outbreaks. We design our method by incorporating specific hospital practices (like swabbing for infections) as well. As a result, our method outperforms state-of-the-art algorithms for outbreak detection. Finally, a qualitative study of our result shows that the people and locations we select to monitor as sensors are intuitive and meaningful.

Indexed as

Cross InfectionDisease OutbreaksAlgorithmsClostridioides difficileClostridium InfectionsComputational BiologyHumansModels, Statistical

Identifiers

PMID31525183
PMCPMC6762212
OpenAlexW2973859947

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.