Evidence map›Paper›PMID 31525179›Full record

ArticlePLoS computational biology2019

Deep learning as a tool for neural data analysis: Speech classification and cross-frequency coupling in human sensorimotor cortex.

Jesse A Livezey, Kristofer E Bouchard, Edward F Chang

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

  1. Pooled it
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  14. Harnessing the Power of Artificial Intelligence in Otolaryngology and the Communication Sciences.Journal of the Association for Research in Otolaryngology : JARO · 2022
    Review
  15. Article
  16. Dementia ConnEEGtome: Towards multicentric harmonization of EEG connectivity in neurodegeneration.International journal of psychophysiology : official journal of the International Organization of Psychophysiology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jesse A LivezeyBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.ORCID 0000-0003-0494-8758
Kristofer E BouchardBiological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.ORCID 0000-0002-1974-4603
Edward F ChangDepartment of Neurological Surgery and Department of Physiology, University of California, San Francisco, San Francisco, California, United States of America.ORCID 0000-0003-2480-4700
Lawrence Berkeley National Laboratory · USUniversity of California, San Francisco · US

Funding

Functional organization of the superior temporal gyrus for speech perceptionR01DC012379 · NIDCD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Edward Chang · 2012 to 2026
$8.3M
Neocortical Mechanisms of Categorical Speech PerceptionR00NS065120 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHANG, EDWARD · 2010 to 2012
$729k
NIDCD NIH HHS R01 DC012379NINDS NIH HHS R00 NS065120
6 · The paper itself

Abstract

A fundamental challenge in neuroscience is to understand what structure in the world is represented in spatially distributed patterns of neural activity from multiple single-trial measurements. This is often accomplished by learning a simple, linear transformations between neural features and features of the sensory stimuli or motor task. While successful in some early sensory processing areas, linear mappings are unlikely to be ideal tools for elucidating nonlinear, hierarchical representations of higher-order brain areas during complex tasks, such as the production of speech by humans. Here, we apply deep networks to predict produced speech syllables from a dataset of high gamma cortical surface electric potentials recorded from human sensorimotor cortex. We find that deep networks had higher decoding prediction accuracy compared to baseline models. Having established that deep networks extract more task relevant information from neural data sets relative to linear models (i.e., higher predictive accuracy), we next sought to demonstrate their utility as a data analysis tool for neuroscience. We first show that deep network's confusions revealed hierarchical latent structure in the neural data, which recapitulated the underlying articulatory nature of speech motor control. We next broadened the frequency features beyond high-gamma and identified a novel high-gamma-to-beta coupling during speech production. Finally, we used deep networks to compare task-relevant information in different neural frequency bands, and found that the high-gamma band contains the vast majority of information relevant for the speech prediction task, with little-to-no additional contribution from lower-frequency amplitudes. Together, these results demonstrate the utility of deep networks as a data analysis tool for basic and applied neuroscience.

Indexed as

Deep LearningComputational BiologyElectrocorticographyHumansSensorimotor CortexSignal Processing, Computer-AssistedSpeech

Identifiers

PMID31525179
PMCPMC6762206
OpenAlexW2794504802

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.