Evidence map›Paper›PMID 31525119›Full record

ArticleAutophagy2020

The Paf1 complex transcriptionally regulates the mitochondrial-anchored protein Atg32 leading to activation of mitophagy.

Liangde Zheng, Wen-Jie Shu, Yu-Min Li, Muriel Mari, Chaojun Yan, Dehe Wang, Zhao-Hong Yin, Wei Jiang, Yu Zhou, Koji Okamoto and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Autophagy, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Guideline
  2. Review
  3. Article
  4. Review
  5. Contrasting views on the role of AMPK in autophagy.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Transcriptional Regulation ofMicrobiology spectrum · 2023
    Article
  11. Review
  12. Review
  13. Article
  14. The PAF1 complex cell autonomously promotes oogenesis in Caenorhabditis elegans.Genes to cells : devoted to molecular & cellular mechanisms · 2022
    Article
  15. Review
  16. Review
  17. Biochemical insights into Paf1 complex-induced stimulation of Rad6/Bre1-mediated H2B monoubiquitination.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Yeast mitophagy: Unanswered questions.Biochimica et biophysica acta. General subjects · 2021
    Review
  19. Inflammatory injury and mitophagy induced by Cr(VI) in chicken liver.Environmental science and pollution research international · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 4 countries.

Liangde ZhengHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Cancer Center of Renmin Hospital of Wuhan University, Wuhan University , Wuhan, China.ORCID 0000-0002-2793-8539
Wen-Jie ShuHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Cancer Center of Renmin Hospital of Wuhan University, Wuhan University , Wuhan, China.
Yu-Min LiHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Cancer Center of Renmin Hospital of Wuhan University, Wuhan University , Wuhan, China.
Muriel MariDepartment of Biomedical Sciences of Cells & Systems, University of Groningen, University Medical Center Groningen , Groningen, The Netherlands.
Chaojun YanHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University , Wuhan, China.
Dehe WangCollege of Life Sciences and Institute for Advanced Studies, Wuhan University , Wuhan, China.
Zhao-Hong YinHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Cancer Center of Renmin Hospital of Wuhan University, Wuhan University , Wuhan, China.
Wei JiangMedical Research Institute, School of Medicine, Wuhan University , Wuhan, China.
Yu ZhouCollege of Life Sciences and Institute for Advanced Studies, Wuhan University , Wuhan, China.
Koji OkamotoThe Laboratory of Mitochondrial Dynamics, Graduate School of Frontier Biosciences, Osaka University , Osaka, Japan.
Fulvio ReggioriDepartment of Biomedical Sciences of Cells & Systems, University of Groningen, University Medical Center Groningen , Groningen, The Netherlands.
Daniel J KlionskyLife Sciences Institute, and the Department of Molecular, Cellular and Developmental Biology, University of Michigan , Ann Arbor, MI, USA.ORCID 0000-0002-7828-8118
Zhiyin SongHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Wuhan University , Wuhan, China.
Hai-Ning DuHubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Cancer Center of Renmin Hospital of Wuhan University, Wuhan University , Wuhan, China.ORCID 0000-0001-8062-5411
Wuhan University · CNUniversity Medical Center Groningen · NLThe University of Osaka · JPUniversity of Michigan · US

Funding

The mechanism and regulation of autophagyR35GM131919 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DANIEL J. KLIONSKY · 2019 to 2026
$6.4M
NIGMS NIH HHS R35 GM131919
6 · The paper itself

Abstract

Mitophagy is a critical process that safeguards mitochondrial quality control in order to maintain proper cellular homeostasis. Although the mitochondrial-anchored receptor Atg32-mediated cargo-recognition system has been well characterized to be essential for this process, the signaling pathway modulating its expression as a contribution of governing the mitophagy process remains largely unknown. Here, bioinformatics analyses of epigenetic or transcriptional regulators modulating gene expression allow us to identify the Paf1 complex (the polymerase-associated factor 1 complex, Paf1C) as a transcriptional repressor of ABBREVIATIONS: AMPK: AMP-activated protein kinase; ATP5F1A: ATP synthase F1 subunit alpha; CALCOCO2/NDP52: calcium binding and coiled-coil domain 2; CCCP: chlorophenylhydrazone; DFP: chelator deferiprone; GFP: green fluorescent protein; H2B-Ub1: H2B monoubiquitination; HSPD1/HSP60: heat shock protein family D (Hsp60) member 1; KD: kinase dead; OPTN, optineurin; Paf1: polymerase-associated factor 1; PINK1: PTEN induced kinase 1; PRKN/Parkin: parkin RBR E3 ubiquitin protein ligase; RT-qPCR: real-time quantitative PCR; SD-N: synthetic dropout without nitrogen base; TIMM23: translocase of inner mitochondrial membrane 23; TOMM20: translocase of outer mitochondrial membrane 20; WT: wild-type; YPD: yeast extract peptone dextrose; YPL: yeast extract peptone lactate.

Indexed as

Transcription, GeneticAutophagy-Related ProteinsGene DeletionGlucoseGreen Fluorescent ProteinsHeLa CellsHumansMitochondriaMitophagyNitrogenProtein SubunitsReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSirolimusTranscription FactorsAtg32 protein, S cerevisiaeAutophagy-Related ProteinsGlucoseGreen Fluorescent ProteinsNitrogenPAF1 protein, humanProtein SubunitsReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiae ProteinsSirolimusTranscription FactorsAtg32glucose starvationmitophagyPaf1 complextranscription

Identifiers

PMID31525119
PMCPMC7469518
OpenAlexW2974592184

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.