Evidence map›Paper›PMID 31522755›Full record

ReviewTrends in ecology & evolution2019

The Pathobiome in Animal and Plant Diseases.

David Bass, Grant D Stentiford, Han-Ching Wang, Britt Koskella, Charles R Tyler

Abstract readReview
In one paragraph

Review in Trends in ecology & evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed.

  1. Virulence · 2026
    Article
  2. Beyond the gut microbe: Rethinking infection, microbiome harmony, and the one-health continuum.World journal of gastrointestinal pharmacology and therapeutics · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. The impacts of biological invasions.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
  10. The island biology of the host microbiome.Trends in microbiology · 2026
    Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

David BassCentre for Environment, Fisheries and Aquaculture Science (CEFAS), Barrack Road, The Nothe, Weymouth, DT4 8UB, UK; Sustainable Aquaculture Futures, University of Exeter, Exeter, EX4 4QD, UK; Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, UK. Electronic address: david.bass@cefas.co.uk.
Grant D StentifordCentre for Environment, Fisheries and Aquaculture Science (CEFAS), Barrack Road, The Nothe, Weymouth, DT4 8UB, UK; Sustainable Aquaculture Futures, University of Exeter, Exeter, EX4 4QD, UK.
Han-Ching WangDepartment of Biotechnology and Bioindustry Sciences, National Cheng Kung University, Tainan, 70101, Taiwan; International Center for Scientific Development of Shrimp Aquaculture, National Cheng Kung University, Tainan, 70101, Taiwan.
Britt KoskellaDepartment of Integrative Biology, University of California, Berkeley, CA 94720, USA.
Charles R TylerSustainable Aquaculture Futures, University of Exeter, Exeter, EX4 4QD, UK; Biosciences, University of Exeter, Stocker Road, Exeter, EX4 4HB, UK.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A growing awareness of the diversity and ubiquity of microbes (eukaryotes, prokaryotes, and viruses) associated with larger 'host' organisms has led to the realisation that many diseases thought to be caused by one primary agent are the result of interactions between multiple taxa and the host. Even where a primary agent can be identified, its effect is often moderated by other symbionts. Therefore, the one pathogen-one disease paradigm is shifting towards the pathobiome concept, integrating the interaction of multiple symbionts, host, and environment in a new understanding of disease aetiology. Taxonomically, pathobiomes are variable across host species, ecology, tissue type, and time. Therefore, a more functionally driven understanding of pathobiotic systems is necessary, based on gene expression, metabolic interactions, and ecological processes.

Indexed as

EukaryotaPlant DiseasesAnimalsEcologySymbiosisdiseasemicrobiomepathobiomepathobioticsymbiomesymbiont

Identifiers

PMID31522755
PMCPMC7479508

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.