Evidence map›Paper›PMID 31519986›Full record

ArticleNature communications2019

Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil.

Yun-Peng Zhao, Guangyi Fan, Ping-Ping Yin, Shuai Sun, Ning Li, Xiaoning Hong, Gang Hu, He Zhang, Fu-Min Zhang, Jing-Dan Han and 18 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 176 citations in OpenAlex.

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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 8 institutions in 5 countries.

Yun-Peng ZhaoLaboratory of Systematic & Evolutionary Botany and Biodiversity, College of Life Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.ORCID http://orcid.org/0000-0003-4393-8472
Guangyi FanBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.
Ping-Ping YinLaboratory of Systematic & Evolutionary Botany and Biodiversity, College of Life Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.ORCID http://orcid.org/0000-0002-7050-0540
Shuai SunBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.ORCID http://orcid.org/0000-0003-1092-3186
Ning LiBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.
Xiaoning HongBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.
Gang HuBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.
He ZhangBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.ORCID http://orcid.org/0000-0001-9294-1403
Fu-Min ZhangState Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
Jing-Dan HanState Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
Ya-Jun HaoLaboratory of Systematic & Evolutionary Botany and Biodiversity, College of Life Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.
Qiwu XuBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.ORCID http://orcid.org/0000-0003-2860-9611
Xianwei YangBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.
Wenjie XiaBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.
Wenbin ChenBGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Han-Yang LinLaboratory of Systematic & Evolutionary Botany and Biodiversity, College of Life Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.
Rui ZhangBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.
Jiang ChenBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China.
Xiao-Ming ZhengLaboratory of Systematic & Evolutionary Botany and Biodiversity, College of Life Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China.
Simon Ming-Yuen LeeState Key Laboratory of Quality Research in Chinese Medicine, Institute of Chinese Medical Sciences, University of Macau, Macau, China.
Joongku LeeDepartment of Environment and Forest Resources, Chungnam National University, Daejeon, 34134, Korea.
Koichi UeharaCollege of Liberal Arts and Sciences, Chiba University, Chiba, 263-8522, Japan.
Jian WangBGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Huanming YangBGI-Shenzhen, Shenzhen, 518083, Guangdong, China.
Cheng-Xin FuLaboratory of Systematic & Evolutionary Botany and Biodiversity, College of Life Sciences, Zhejiang University, Hangzhou, 310058, Zhejiang, China. cxfu@zju.edu.cn.
Xin LiuBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China. liuxin@genomics.cn.ORCID http://orcid.org/0000-0003-3256-2940
Xun XuBGI-Qingdao, BGI-Shenzhen, Qingdao, 266555, Shandong, China. xuxun@genomics.cn.ORCID http://orcid.org/0000-0002-5338-5173
Song GeState Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China. gesong@ibcas.ac.cn.ORCID http://orcid.org/0000-0002-7683-5579
Zhejiang University · CNBGI Group (China) · CNChinese Academy of Sciences · CNChiba University · JPChungnam National University · KRInstitute of Botany of the Slovak Academy of Sciences · SKUniversity of Chinese Academy of Sciences · CNUniversity of Macau · MO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As Charles Darwin anticipated, living fossils provide excellent opportunities to study evolutionary questions related to extinction, competition, and adaptation. Ginkgo (Ginkgo biloba L.) is one of the oldest living plants and a fascinating example of how people have saved a species from extinction and assisted its resurgence. By resequencing 545 genomes of ginkgo trees sampled from 51 populations across the world, we identify three refugia in China and detect multiple cycles of population expansion and reduction along with glacial admixture between relict populations in the southwestern and southern refugia. We demonstrate multiple anthropogenic introductions of ginkgo from eastern China into different continents. Further analyses reveal bioclimatic variables that have affected the geographic distribution of ginkgo and the role of natural selection in ginkgo's adaptation and resilience. These investigations provide insights into the evolutionary history of ginkgo trees and valuable genomic resources for further addressing various questions involving living fossil species.

Indexed as

Biological EvolutionGenome, PlantPhylogenyAdaptation, PhysiologicalChinaFossilsGenomicsGinkgo bilobaSeedsSelection, Genetic

Identifiers

PMID31519986
PMCPMC6744486
OpenAlexW2972622596

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.