Evidence map›Paper›PMID 31519061›Full record

ArticleJournal of thrombosis and haemostasis : JTH2019

Hydrogen-deuterium exchange mass spectrometry highlights conformational changes induced by factor XI activation and binding of factor IX to factor XIa.

Awital Bar Barroeta, Josse van Galen, Ingrid Stroo, J Arnoud Marquart, Alexander B Meijer, Joost C M Meijers

Abstract read
In one paragraph

Article in Journal of thrombosis and haemostasis : JTH, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. HK is the apple of FXI's eye.Journal of thrombosis and haemostasis : JTH · 2022
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Role of platelets in regulating activated coagulation factor XI activity.American journal of physiology. Cell physiology · 2021
    Article
  10. Article
  11. Article
  12. Toward a better understanding of factor XI activation.Journal of thrombosis and haemostasis : JTH · 2019
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Awital Bar BarroetaDepartment of Molecular and Cellular Hemostasis, Sanquin Research, Amsterdam, The Netherlands.ORCID 0000-0002-0744-5569
Josse van GalenDepartment of Molecular and Cellular Hemostasis, Sanquin Research, Amsterdam, The Netherlands.
Ingrid StrooDepartment of Molecular and Cellular Hemostasis, Sanquin Research, Amsterdam, The Netherlands.
J Arnoud MarquartDepartment of Molecular and Cellular Hemostasis, Sanquin Research, Amsterdam, The Netherlands.
Alexander B MeijerDepartment of Molecular and Cellular Hemostasis, Sanquin Research, Amsterdam, The Netherlands.ORCID 0000-0002-5447-7838
Joost C M MeijersDepartment of Molecular and Cellular Hemostasis, Sanquin Research, Amsterdam, The Netherlands.ORCID 0000-0002-4198-6780

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFactor XI (FXI) is a zymogen in the coagulation pathway that, once activated, promotes haemostasis by activating factor IX (FIX). Substitution studies using apple domains of the homologous protein prekallikrein have identified that FIX binds to the apple 3 domain of FXI. However, the molecular changes upon activation of FXI or binding of FIX to FXIa have remained largely unresolved.

objectivesThis study aimed to gain more insight in the FXI activation mechanism by identifying the molecular differences between FXI and FXIa, and in the conformational changes in FXIa induced by binding of FIX.

methodsHydrogen-deuterium exchange mass spectrometry was performed on FXI, FXIa, and FXIa in complex with FIX.

resultsBoth activation and binding to FIX induced conformational changes at the interface between the catalytic domain and the apple domains of FXI(a)-more specifically at the loops connecting the apple domains. Moreover, introduction of FIX uniquely induced a reduction of deuterium uptake in the beginning of the apple 3 domain.

conclusionsWe propose that the conformational changes of the catalytic domain upon activation increase the accessibility to the apple 3 domain to enable FIX binding. Moreover, our HDX MS results support the location of the proposed FIX binding site at the beginning of the apple 3 domain and suggest a mediating role in FIX binding for both loops adjacent to the apple 3 domain.

Indexed as

HemostasisHydrogen Deuterium Exchange-Mass SpectrometryEnzyme ActivationFactor IXFactor XIFactor XIaHEK293 CellsHumansModels, MolecularProtein BindingProtein Interaction Domains and MotifsStructure-Activity RelationshipFactor IXFactor XIFactor XIafactor IXfactor XIfactor XIahemostasismass spectrometry

Identifiers

PMID31519061
PMCPMC6916417

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.