Evidence map›Paper›PMID 31518447›Full record

ArticleMolecular microbiology2019

The Escherichia coli MarA protein regulates the ycgZ-ymgABC operon to inhibit biofilm formation.

Rachel A Kettles, Natalia Tschowri, Kevin J Lyons, Prateek Sharma, Regine Hengge, Mark A Webber, David C Grainger

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  8. Modulation of virulence and metabolic profiles inFrontiers in cellular and infection microbiology · 2025
    Article
  9. Article
  10. Article
  11. RcsF-independent mechanisms of signaling within the Rcs Phosphorelay.bioRxiv : the preprint server for biology · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. Suppressors ofInternational journal of molecular sciences · 2023
    Article
  16. Mapping direct and indirect MarA/SoxS/Rob/RamA regulons inMicrobiology (Reading, England) · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Rachel A KettlesSchool of Biosciences, Institute of Microbiology and Infection, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Natalia TschowriInstitut für Biologie/Mikrobiologie, Humboldt-Universität zu Berlin, 10115, Berlin, Germany.
Kevin J LyonsSchool of Biosciences, Institute of Microbiology and Infection, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Prateek SharmaSchool of Biosciences, Institute of Microbiology and Infection, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.
Regine HenggeInstitut für Biologie/Mikrobiologie, Humboldt-Universität zu Berlin, 10115, Berlin, Germany.
Mark A WebberQuadram Institute Bioscience, Norwich Research Park, Norwich, NR4 7UQ, UK.
David C GraingerSchool of Biosciences, Institute of Microbiology and Infection, University of Birmingham, Edgbaston, Birmingham, B15 2TT, UK.ORCID 0000-0003-3375-5154
University of Birmingham · GBHumboldt-Universität zu Berlin · DENorwich Research Park · GB

Funding

Biotechnology and Biological Sciences Research Council BB/N014200/1Biotechnology and Biological Sciences Research Council BB/R012504/1
6 · The paper itself

Abstract

The Escherichia coli marRAB operon is a paradigm for chromosomally encoded antibiotic resistance. The operon exerts its effect via an encoded transcription factor called MarA that modulates efflux pump and porin expression. In this work, we show that MarA is also a regulator of biofilm formation. Control is mediated by binding of MarA to the intergenic region upstream of the ycgZ-ymgABC operon. The operon, known to influence the formation of curli fibres and colanic acid, is usually expressed during periods of starvation. Hence, the ycgZ-ymgABC promoter is recognised by σ

Indexed as

Bacterial ProteinsBiofilmsDNA-Binding ProteinsDNA-Directed RNA PolymerasesDrug Resistance, Multiple, BacterialEscherichia coliEscherichia coli ProteinsMultienzyme ComplexesPhosphoprotein PhosphatasesPorinsProtein KinasesSigma FactorTranscription, GeneticBacterial ProteinsDNA-Binding ProteinsDNA-Directed RNA PolymerasesEscherichia coli ProteinsMarA protein, E coliMultienzyme ComplexesPhosphoprotein PhosphatasesPorinsProtein KinasesrcsC protein, E coliSigma Factorsigma factor KatF protein, BacteriaYmgB protein, E coli

Identifiers

PMID31518447
PMCPMC6900184
OpenAlexW2972988846

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.