Evidence map›Paper›PMID 31518362›Full record

ArticlePloS one2019

Epstein-Barr virus genome packaging factors accumulate in BMRF1-cores within viral replication compartments.

Atsuko Sugimoto, Yoriko Yamashita, Teru Kanda, Takayuki Murata, Tatsuya Tsurumi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
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  8. Epigenetic lifestyle of Epstein-Barr virus.Seminars in immunopathology · 2020
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Atsuko SugimotoDivision of Virology, Aichi Cancer Center Research Institute, Chikusa-ku, Nagoya, Japan.
Yoriko YamashitaDepartment of Experimental Pathology and Tumor Biology, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.ORCID 0000-0002-1468-8817
Teru KandaDivision of Virology, Aichi Cancer Center Research Institute, Chikusa-ku, Nagoya, Japan.
Takayuki MurataDivision of Virology, Aichi Cancer Center Research Institute, Chikusa-ku, Nagoya, Japan.ORCID 0000-0001-7228-0839
Tatsuya TsurumiDivision of Virology, Aichi Cancer Center Research Institute, Chikusa-ku, Nagoya, Japan.
Aichi Cancer Center · JPFujita Health University · JPNagoya City University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Productive replication of Epstein-Barr virus (EBV) during the lytic cycle occurs in discrete sites within nuclei, termed replication compartments. We previously proposed that replication compartments consist of two subnuclear domains: "ongoing replication foci" and "BMRF1-cores". Viral genome replication takes place in ongoing replication foci, which are enriched with viral replication proteins, such as BALF5 and BALF2. Amplified DNA and BMRF1 protein accumulate in BMRF1-cores, which are surrounded by ongoing replication foci. We here determined the locations of procapsid and genome-packaging proteins of EBV via three-dimensional (3D) surface reconstruction and correlative fluorescence microscopy-electron microscopy (FM-EM). The results revealed that viral factors required for DNA packaging, such as BGLF1, BVRF1, and BFLF1 proteins, are located in the innermost subdomains of the BMRF1-cores. In contrast, capsid structural proteins, such as BBRF1, BORF1, BDLF1, and BVRF2, were found both outside and inside the BMRF1-cores. Based on these observations, we propose a model in which viral procapsids are assembled outside the BMRF1-cores and subsequently migrate therein, where viral DNA encapsidation occurs. To our knowledge, this is the first report describing capsid assembly sites in relation to EBV replication compartments.

Indexed as

Antigens, ViralCell LineCell NucleusDNA-Binding ProteinsDNA ReplicationDNA, ViralGenome, ViralHerpesvirus 4, HumanHumansViral ProteinsVirus ReplicationAntigens, ViralDNA-Binding ProteinsDNA, ViralEpstein-Barr virus early antigen diffuse componentViral Proteins

Identifiers

PMID31518362
PMCPMC6743757
OpenAlexW2972387424

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.