Evidence map›Paper›PMID 31516339›Full record

ArticleSaudi journal of biological sciences2019

Molecular analysis of V617F mutation in Janus kinase 2 gene of breast cancer patients.

Sajjad Karim, Imran Riaz Malik, Quratulain Nazeer, Ahmad Zaheer, Muhammad Farooq, Nasir Mahmood, Arif Malik, Muhammad Asif, Asim Mehmood, Abdul Rehman Khan and 7 more

Open access · hybridAbstract read
In one paragraph

Article in Saudi journal of biological sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 2 countries.

Sajjad KarimCenter of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, Saudi Arabia.
Imran Riaz MalikDepartment of Biotechnology, University of Sargodha, Sargodha, Pakistan.
Quratulain NazeerDepartment of Biotechnology, University of Sargodha, Sargodha, Pakistan.
Ahmad ZaheerInstitute of Molecular Biology and Biotechnology, The University of Lahore, Defence Road, Lahore, Pakistan.
Muhammad FarooqDepartment of Bioinformatics and Biotechnology, Government College University Faisalabad, Pakistan.
Nasir MahmoodDepartment of Biochemistry, Human Genetics and Molecular Biology, University of Health Sciences, Lahore, Pakistan.
Arif MalikInstitute of Molecular Biology and Biotechnology, The University of Lahore, Defence Road, Lahore, Pakistan.
Muhammad AsifDepartment of Biotechnology, BUITEMS, Quetta, Pakistan.
Asim MehmoodDepartment of Biosciences, COMSATS University Islamabad, Sahiwal, Pakistan.
Abdul Rehman KhanObesity & Diabetes Research Laboratory, Department of Chemistry, University of Azad Jammu & Kashmir Muzaffarabad, AJK 13100, Pakistan.
Abdul JabbarDepartment of Biotechnology, Mirpur University of Science and Technology (MUST), Mirpur-10250 (AJK), Pakistan.
Muhammad ArshadDepartment of Biotechnology, University of Okara, Okara, Pakistan.
Qudsia YousafiDepartment of Biosciences, COMSATS University Islamabad, Sahiwal, Pakistan.
Abrar HussainDepartment of Biosciences, COMSATS University Islamabad, Sahiwal, Pakistan.
Zeenat MirzaDepartment of Medical Laboratory Technology, Faculty of Applied Medical Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.
Muhammad Atif IqbalDepartment of Biotechnology, University of Okara, Okara, Pakistan.
Mahmood RasoolCenter of Excellence in Genomic Medicine Research (CEGMR), King Abdulaziz University, Jeddah, Saudi Arabia.
COMSATS University Islamabad · PKKing Abdulaziz University · SAUniversity of Lahore · PKUniversity of Okara · PKUniversity of Sargodha · PKBalochistan University of Information Technology, Engineering and Management Sciences · PKGovernment College University, Faisalabad · PKMirpur University of Science and Technology · PKUniversity of Azad Jammu and Kashmir · PKUniversity of Health Sciences Lahore · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBreast cancer is a multifactorial disease with the highest frequency in females. Genetic and environmental factors can cause mutation in several genes like tyrosine kinase, JAK2 gene which may initiate cancer. Molecular analysis of mutations in the

methodsBlood was collected from seventy breast cancer patients after their consent. The questionnaire included risk factors, age group, locality, number of children, tumor type, family history, time of initial diagnosis, no of cycles/month, water conditions and exposure to radiations. Molecular analysis were carried out from genomic DNA using Sanger sequencing and allele-specific PCR to check the V617F point mutation.

resultsThe breast cancer risk factors includes unfiltered water (68.57%), urban (58.57%), menopause (55.71%), family history of cancer (18.57%), tumor grades (II, 37.14% and III, 35.71%), consanguineous marriages (44.28%) and having more than 3-4 children (45.71%). Prevalence of breast cancer was higher after the age of 35 and maximum at 35-50. In allele-specific PCR of 70 patients, 25 patients were wild type (229 bp), 25 patients were with partially deleted gene (200 bp), and 20 patient had shown no or less than 40 bp size fragments. In Sanger's sequencing of 70 BC cases, 18% were found to be positive for V617F point mutation, including 6 homozygous (T/T) and 7 heterozygous (G/T) mutations at nucleotide position 1849 in exon 14 of the

conclusionsEnvironmental and clinical risk factors were associated with breast cancer which can be overcome by improving awareness of associated risks, health facilities and reducing stress.

Indexed as

Allele-specific PCRBreast cancerJAK2Sanger’s sequencingV617F mutation

Identifiers

PMID31516339
PMCPMC6733781
OpenAlexW2966068122

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.