Evidence map›Paper›PMID 31516122›Full record

ArticleeLife2019

Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle.

Alfonso Santos-Lopez, Christopher W Marshall, Michelle R Scribner, Daniel J Snyder, Vaughn S Cooper

Abstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Genetic diversification ofApplied and environmental microbiology · 2026
    Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. HJournal of nanobiotechnology · 2025
    Article
  15. Review
  16. Colistin resistance dynamics inAntimicrobial agents and chemotherapy · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Alfonso Santos-Lopez *Department of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, United States.ORCID 0000-0002-9163-9947
Christopher W Marshall *Department of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, United States.
Michelle R ScribnerDepartment of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, United States.
Daniel J SnyderDepartment of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, United States.
Vaughn S CooperDepartment of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, United States.ORCID 0000-0001-7726-0765

Funding

Predicting the emergence of antibiotic resistance through multi-omics approaches and Immune System-surveillanU01AI124302 · NIAID · BOSTON COLLEGE · PI BENTO, JOSE, COOPER, VAUGHN · 2016 to 2020
$10.2M
Viral Persistence and PathogenesisT32AI049820 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DELUCA, NEAL A. · 2001 to 2024
$5.5M
NIAID NIH HHS T32 AI049820NIAID NIH HHS U01 AI124302NIH HHS U01AI124302-01
6 · The paper itself

Abstract

Bacterial populations vary in their stress tolerance and population structure depending upon whether growth occurs in well-mixed or structured environments. We hypothesized that evolution in biofilms would generate greater genetic diversity than well-mixed environments and lead to different pathways of antibiotic resistance. We used experimental evolution and whole genome sequencing to test how the biofilm lifestyle influenced the rate, genetic mechanisms, and pleiotropic effects of resistance to ciprofloxacin in

Indexed as

Biological EvolutionDrug Resistance, BacterialEnvironmental ExposureAcinetobacter baumanniiAdaptation, BiologicalAnti-Bacterial AgentsBiofilmsCiprofloxacinGenetics, PopulationSelection, GeneticWhole Genome SequencingAnti-Bacterial AgentsCiprofloxacinAcinetobacter baumanniiantimicrobial resistancebiofilmevolutionary biologyinfectious diseasemicrobiologypopulation genetics

Identifiers

PMID31516122
PMCPMC6814407

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.