Evidence map›Paper›PMID 31515876›Full record

ArticleMolecular microbiology2019

The Loz1 transcription factor from Schizosaccharomyces pombe binds to Loz1 response elements and represses gene expression when zinc is in excess.

Stevin Wilson, Yi-Hsuan Liu, Carlos Cardona-Soto, Vibhuti Wadhwa, Mark P Foster, Amanda J Bird

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Conformational dynamics in specialized CProtein science : a publication of the Protein Society · 2025
    Article
  3. Zinc homeostasis in Schizosaccharomyces pombe.Archives of microbiology · 2023
    Review
  4. Transcription factors and transporters in zinc homeostasis: lessons learned from fungi.Critical reviews in biochemistry and molecular biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Stevin WilsonDepartment of Molecular Genetics, The Ohio State University, Columbus, OH, 43210, USA.
Yi-Hsuan LiuDepartment of Human Nutrition, The Ohio State University, Columbus, OH, 43210, USA.
Carlos Cardona-SotoDepartment of Human Nutrition, The Ohio State University, Columbus, OH, 43210, USA.
Vibhuti WadhwaDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, 43210, USA.
Mark P FosterDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH, 43210, USA.
Amanda J BirdDepartment of Molecular Genetics, The Ohio State University, Columbus, OH, 43210, USA.ORCID 0000-0002-1846-7050
The Ohio State University · US

Funding

Zinc-dependent regulation of gene expressionR01GM105695 · NIGMS · OHIO STATE UNIVERSITY · PI BIRD, AMANDA JANE · 2014 to 2018
$1.4M
Typhoon FLA9500 Biomedical ImagerS10OD023582 · OD · OHIO STATE UNIVERSITY · PI JACKMAN, JANE ELIZABETH · 2017 to 2017
$144k
NIGMS NIH HHS R01 GM105695NIH HHS S10 OD023582
6 · The paper itself

Abstract

In Schizosaccharomyces pombe, the expression of the zrt1 zinc uptake gene is tightly regulated by zinc status. When intracellular zinc levels are low, zrt1 is highly expressed. However, when zinc levels are high, transcription of zrt1 is blocked in a manner that is dependent upon the transcription factor Loz1. To gain additional insight into the mechanism by which Loz1 inhibits gene expression in high zinc, we used RNA-seq to identify Loz1-regulated genes, and ChIP-seq to analyze the recruitment of Loz1 to target gene promoters. We find that Loz1 is recruited to the promoters of 27 genes that are also repressed in high zinc in a Loz1-dependent manner. We also find that the recruitment of Loz1 to the majority of target gene promoters is dependent upon zinc and the motif 5'-CGN(A/C)GATCNTY-3', which we have named the Loz1 response element (LRE). Using reporter assays, we show that LREs are both required and sufficient for Loz1-mediated gene repression, and that the level of gene repression is dependent upon the number and sequence of LREs. Our results elucidate the Loz1 regulon in fission yeast and provide new insight into how eukaryotic cells are able to respond to changes in zinc availability in the environment.

Indexed as

Cation Transport ProteinsGene ExpressionGene Expression Regulation, FungalHomeostasisPromoter Regions, GeneticResponse ElementsSchizosaccharomycesSchizosaccharomyces pombe ProteinsTranscription FactorsZincZinc FingersCation Transport ProteinsLoz1 protein, S pombeSchizosaccharomyces pombe ProteinsTranscription FactorsZinc

Identifiers

PMID31515876
PMCPMC6904500
OpenAlexW2973057677

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.