Evidence map›Paper›PMID 31515872›Full record

ArticleThe EMBO journal2019

The Sir4 H-BRCT domain interacts with phospho-proteins to sequester and repress yeast heterochromatin.

Ishan Deshpande, Jeremy J Keusch, Kiran Challa, Vytautas Iesmantavicius, Susan M Gasser, Heinz Gut

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
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  6. Article
  7. HJournal of fungi (Basel, Switzerland) · 2021
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ishan DeshpandeFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Jeremy J KeuschFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.ORCID 0000-0001-7576-0838
Kiran ChallaFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Vytautas IesmantaviciusFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Susan M GasserFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
Heinz GutFriedrich Miescher Institute for Biomedical Research, Basel, Switzerland.ORCID 0000-0001-7205-6044
Friedrich Miescher Institute · CHUniversity of Basel · CH

Funding

Novartis Research FoundationSwiss National Science Foundation 31003A_176286
6 · The paper itself

Abstract

In Saccharomyces cerevisiae, the silent information regulator (SIR) proteins Sir2/3/4 form a complex that suppresses transcription in subtelomeric regions and at the homothallic mating-type (HM) loci. Here, we identify a non-canonical BRCA1 C-terminal domain (H-BRCT) in Sir4, which is responsible for tethering telomeres to the nuclear periphery. We show that Sir4 H-BRCT and the closely related Dbf4 H-BRCT serve as selective phospho-epitope recognition domains that bind to a variety of phosphorylated target peptides. We present detailed structural information about the binding mode of established Sir4 interactors (Esc1, Ty5, Ubp10) and identify several novel interactors of Sir4 H-BRCT, including the E3 ubiquitin ligase Tom1. Based on these findings, we propose a phospho-peptide consensus motif for interaction with Sir4 H-BRCT and Dbf4 H-BRCT. Ablation of the Sir4 H-BRCT phospho-peptide interaction disrupts SIR-mediated repression and perinuclear localization. In conclusion, the Sir4 H-BRCT domain serves as a hub for recruitment of phosphorylated target proteins to heterochromatin to properly regulate silencing and nuclear order.

Indexed as

Gene SilencingAmino Acid SequenceGene Expression Regulation, FungalHeterochromatinNuclear ProteinsPhosphoproteinsProtein ConformationProtein DomainsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence HomologySilent Information Regulator Proteins, Saccharomyces cerevisiaeTelomereUbiquitin-Protein LigasesUbiquitin ThiolesteraseEsc1 protein, S cerevisiaeHeterochromatinNuclear ProteinsPhosphoproteinsSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR4 protein, S cerevisiaeTOM1 protein, S cerevisiaeUbiquitin-Protein LigasesUbiquitin ThiolesteraseUBP10 protein, S cerevisiaeDbf4heterochromatinSir4 BRCT domainSIR complexTom1

Identifiers

PMID31515872
PMCPMC6792019
OpenAlexW2972610629

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.