Evidence map›Paper›PMID 31515475›Full record

ArticleNature communications2019

Autoinhibition and activation mechanisms of the eukaryotic lipid flippase Drs2p-Cdc50p.

Lin Bai, Amanda Kovach, Qinglong You, Hao-Chi Hsu, Gongpu Zhao, Huilin Li

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 72 citations in OpenAlex.

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  15. Functional Analysis of the P-Type ATPases Apt2-4 fromJournal of fungi (Basel, Switzerland) · 2023
    Article
  16. Article
  17. Lipid Transport byInfection and immunity · 2022
    Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Lin BaiStructural Biology Program, Van Andel Research Institute, Grand Rapids, MI, 49503, USA. Lin.Bai@vai.org.ORCID http://orcid.org/0000-0002-7535-7819
Amanda KovachStructural Biology Program, Van Andel Research Institute, Grand Rapids, MI, 49503, USA.
Qinglong YouStructural Biology Program, Van Andel Research Institute, Grand Rapids, MI, 49503, USA.ORCID http://orcid.org/0000-0002-5160-6198
Hao-Chi HsuStructural Biology Program, Van Andel Research Institute, Grand Rapids, MI, 49503, USA.
Gongpu ZhaoDavid Van Andel Advanced Cryo-Electron Microscopy Suite, Van Andel Research Institute, Grand Rapids, MI, 49503, USA.ORCID http://orcid.org/0000-0003-0330-1581
Huilin LiStructural Biology Program, Van Andel Research Institute, Grand Rapids, MI, 49503, USA. Huilin.Li@vai.org.ORCID http://orcid.org/0000-0001-8085-8928
Van Andel Institute · US

Funding

The structure and function of eukaryotic protein glycosylation enzymesR01CA231466 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI Huilin Li · 2018 to 2026
$4.0M
NCI NIH HHS R01 CA231466
6 · The paper itself

Abstract

The heterodimeric eukaryotic Drs2p-Cdc50p complex is a lipid flippase that maintains cell membrane asymmetry. The enzyme complex exists in an autoinhibited form in the absence of an activator and is specifically activated by phosphatidylinositol-4-phosphate (PI4P), although the underlying mechanisms have been unclear. Here we report the cryo-EM structures of intact Drs2p-Cdc50p isolated from S. cerevisiae in apo form and in the PI4P-activated form at 2.8 Å and 3.3 Å resolution, respectively. The structures reveal that the Drs2p C-terminus lines a long groove in the cytosolic regulatory region to inhibit the flippase activity. PIP4 binding in a cytosol-proximal membrane region triggers a 90° rotation of a cytosolic helix switch that is located just upstream of the inhibitory C-terminal peptide. The rotation of the helix switch dislodges the C-terminus from the regulatory region, activating the flippase.

Indexed as

Adenosine TriphosphateBinding SitesCalcium-Transporting ATPasesLipidsModels, MolecularPhosphatidylinositol PhosphatesProtein ConformationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSubstrate SpecificityAdenosine TriphosphateCalcium-Transporting ATPasesCDC50 protein, S cerevisiaeDRS2 protein, S cerevisiaeLipidsphosphatidylinositol 4-phosphatePhosphatidylinositol PhosphatesSaccharomyces cerevisiae Proteins

Identifiers

PMID31515475
PMCPMC6742660
OpenAlexW2972846839

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.