Evidence map›Paper›PMID 31515004›Full record

ArticleStructure (London, England : 1993)2019

Convergent Evolution of the Barnase/EndoU/Colicin/RelE (BECR) Fold in Antibacterial tRNase Toxins.

Grant C Gucinski, Karolina Michalska, Fernando Garza-Sánchez, William H Eschenfeldt, Lucy Stols, Josephine Y Nguyen, Celia W Goulding, Andrzej Joachimiak, Christopher S Hayes

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

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  13. Ribonuclease T2 represents a distinct circularly permutated version of the BECR RNases.Protein science : a publication of the Protein Society · 2023
    Article
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  15. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Grant C GucinskiBiomolecular Science and Engineering Program, University of California, Santa Barbara, CA, USA.
Karolina MichalskaMidwest Center for Structural Genomics, Argonne National Laboratory, Lemont, IL, USA; Structural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL, USA.
Fernando Garza-SánchezDepartment of Molecular, Cellular and Developmental Biology, University of California, Santa Barbara, CA, USA.
William H EschenfeldtMidwest Center for Structural Genomics, Argonne National Laboratory, Lemont, IL, USA.
Lucy StolsMidwest Center for Structural Genomics, Argonne National Laboratory, Lemont, IL, USA.
Josephine Y NguyenDepartment of Molecular, Cellular and Developmental Biology, University of California, Santa Barbara, CA, USA.
Celia W GouldingDepartment of Molecular Biology & Biochemistry, University of California, Irvine, CA, USA; Department of Pharmaceutical Sciences, University of California, Irvine, CA, USA.
Andrzej JoachimiakMidwest Center for Structural Genomics, Argonne National Laboratory, Lemont, IL, USA; Structural Biology Center, X-ray Science Division, Argonne National Laboratory, Lemont, IL, USA; Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, IL, USA.
Christopher S HayesBiomolecular Science and Engineering Program, University of California, Santa Barbara, CA, USA; Department of Molecular, Cellular and Developmental Biology, University of California, Santa Barbara, CA, USA. Electronic address: chayes@lifesci.ucsb.edu.

Funding

Midwest Center for Structural GenomicsU54GM094585 · NIGMS · UNIVERSITY OF CHICAGO · PI MINOR, WLADEK · 2010 to 2014
$33.7M
The Midwest Center for Structural Genomics - Community ResourceR24GM115586 · NIGMS · UNIVERSITY OF CHICAGO · PI JOACHIMIAK, ANDRZEJ · 2015 to 2017
$2.8M
Structure-function analysis of polymorphic CDI toxin-immunity protein complexes aU01GM102318 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI GOULDING, CELIA · 2012 to 2016
$1.7M
Molecular mechanisms of antibacterial CDI toxin activationR01GM117373 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI GOULDING, CELIA, HAYES, CHRISTOPHER S. · 2016 to 2019
$1.2M
NIGMS NIH HHS R01 GM117373NIGMS NIH HHS R24 GM115586NIGMS NIH HHS U01 GM102318NIGMS NIH HHS U54 GM094585
6 · The paper itself

Abstract

Contact-dependent growth inhibition (CDI) is a form of interbacterial competition mediated by CdiB-CdiA two-partner secretion systems. CdiA effector proteins carry polymorphic C-terminal toxin domains (CdiA-CT), which are neutralized by specific CdiI immunity proteins to prevent self-inhibition. Here, we present the crystal structures of CdiA-CT⋅CdiI complexes from Klebsiella pneumoniae 342 and Escherichia coli 3006. The toxins adopt related folds that resemble the ribonuclease domain of colicin D, and both are isoacceptor-specific tRNases that cleave the acceptor stem of deacylated tRNA

Indexed as

Evolution, MolecularToxin-Antitoxin SystemsBacterial ProteinsBacterial ToxinsBinding SitesColicinsEscherichia coliEscherichia coli ProteinsKlebsiella pneumoniaeMembrane ProteinsProtein BindingRibonucleasesRNA, TransferBacillus amyloliquefaciens ribonucleaseBacterial ProteinsBacterial ToxinsCdiA protein, E coliCdiB protein, E coliColicinsEscherichia coli ProteinsMembrane ProteinsRelE protein, E coliRibonucleasesRNA, Transferbacterial competitiontoxin-antitoxin systemstwo-partner secretiontype V secretion system

Identifiers

PMID31515004
PMCPMC6834915

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.