Evidence map›Paper›PMID 31513860›Full record

ArticleJournal of virological methods2019

A rapid RT-LAMP assay for the detection of all four lineages of Peste des Petits Ruminants Virus.

Paulina Rajko-Nenow, John Flannery, Hannah Arnold, Emma L A Howson, Karin Darpel, Anna Stedman, Amanda Corla, Carrie Batten

Open access · hybridAbstract readEvaluation Study
In one paragraph

Article in Journal of virological methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
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  10. "FastCheckViruses · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Paulina Rajko-NenowThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, GU24 0NF, UK. Electronic address: paulina.rajko-nenow@pirbright.ac.uk.
John FlanneryThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, GU24 0NF, UK.
Hannah ArnoldThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, GU24 0NF, UK.
Emma L A HowsonThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, GU24 0NF, UK.
Karin DarpelThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, GU24 0NF, UK.
Anna StedmanThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, GU24 0NF, UK.
Amanda CorlaThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, GU24 0NF, UK.
Carrie BattenThe Pirbright Institute, Ash Road, Pirbright, Woking, Surrey, GU24 0NF, UK.
The Pirbright Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/I/00007037
6 · The paper itself

Abstract

Peste des petits ruminants (PPR) is a viral disease of small ruminants that is caused by the PPR virus (PPRV) and is a significant burden on subsistence farmers across the developing world. Loop-mediated isothermal amplification (LAMP) provides cost-effective, rapid, specific and sensitive detection of nucleic acid and has been demonstrated to have field application for a range of viruses. We describe the development of a novel PPRV RT-LAMP assay utilising carefully-selected primers (targeting the N-gene) allowing for the detection of all known PPRV lineages in < 20 min. The assay was evaluated in comparison with a "gold standard" real-time RT-PCR assay using more than 200 samples, comprising samples from recent PPRV outbreaks, experimentally-infected goats, well-characterised cell culture isolates and samples collected from uninfected animals. The RT-LAMP assay demonstrated 100% diagnostic specificity and greater than 97% diagnostic sensitivity in comparison with the real-time RT-PCR assay. The limit of detection was between 0.3 and 0.8 log

Indexed as

AnimalsDNA PrimersGoat DiseasesGoatsMolecular Diagnostic TechniquesNucleic Acid Amplification TechniquesPeste-des-Petits-RuminantsPeste-des-petits-ruminants virusSensitivity and SpecificityTime FactorsDNA PrimersDiagnosticsOutbreakPPRVRT-LAMPSurveillance

Identifiers

PMID31513860
PMCPMC6859475
OpenAlexW2972757728

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.