ArticleGigaScience2019
A draft genome assembly of halophyte Suaeda aralocaspica, a plant that performs C4 photosynthesis within individual cells.
Article in GigaScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
- Advancing our understanding of photosynthesis: discoveries and insights from aquatic plants.Synthetic and systems biotechnology · 2027Review
- Identification, cloning and expression analysis of chloroplast TOC-TIC complex components in a CBMC plant biology · 2026Article
- Genome evolution and regulatory dynamics underlying salt stress tolerance in the halophyte Halogeton arachnoideus.Communications biology · 2026Article
- Genomics-assisted breeding for designing salinity-smart future crops.Plant biotechnology journal · 2025Review
- Genome-Wide Comparative Analysis of Five Amaranthaceae Species Reveals a Large Amount of Repeat Content.Plants (Basel, Switzerland) · 2024Article
- The genome sequence of purple glasswort,Wellcome open research · 2024Article
- Identification and selection of reference genes for analysis of gene expression by quantitative real-time PCR in the euhalophyteCommunicative & integrative biology · 2024Article
- Chromosome-scale genome sequence ofHorticulture research · 2023Article
- Genome-Wide Development of Polymorphic Microsatellite Markers and Genetic Diversity Analysis for the HalophytePlants (Basel, Switzerland) · 2023Article
- Article
- Detecting macroevolutionary genotype-phenotype associations using error-corrected rates of protein convergence.Nature ecology & evolution · 2023Article
- Comparative transcriptomics reveals the role of altered energy metabolism in the establishment of single-cell CFrontiers in plant science · 2023Article
- Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022Article
- Genome-Wide Characterization and Analysis of the bHLH Transcription Factor Family inFrontiers in genetics · 2022Article
- The Developmental Delay of Seedlings With Cotyledons Only Confers Stress Tolerance toFrontiers in plant science · 2022Article
- The first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from Himalayas.Scientific reports · 2021Article
- Genome-Wide Identification and Analysis of the Phosphoenolpyruvate Carboxylase Gene Family inFrontiers in plant science · 2021Article
- A high-quality genome sequence of alkaligrass provides insights into halophyte stress tolerance.Science China. Life sciences · 2020Article
- Genome of extreme halophyte Puccinellia tenuiflora.BMC genomics · 2020Article
- Plant Biosystems Design Research Roadmap 1.0.Biodesign research · 2020Review
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13 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe halophyte Suaeda aralocaspica performs complete C4 photosynthesis within individual cells (SCC4), which is distinct from typical C4 plants, which require the collaboration of 2 types of photosynthetic cells. However, despite SCC4 plants having features that are valuable in engineering higher photosynthetic efficiencies in agriculturally important C3 species such as rice, there are no reported sequenced SCC4 plant genomes, limiting our understanding of the mechanisms involved in, and evolution of, SCC4 photosynthesis.
findingsUsing Illumina and Pacific Biosciences sequencing platforms, we generated ∼202 Gb of clean genomic DNA sequences having a 433-fold coverage based on the 467 Mb estimated genome size of S. aralocaspica. The final genome assembly was 452 Mb, consisting of 4,033 scaffolds, with a scaffold N50 length of 1.83 Mb. We annotated 29,604 protein-coding genes using Evidence Modeler based on the gene information from ab initio predictions, homology levels with known genes, and RNA sequencing-based transcriptome evidence. We also annotated noncoding genes, including 1,651 long noncoding RNAs, 21 microRNAs, 382 transfer RNAs, 88 small nuclear RNAs, and 325 ribosomal RNAs. A complete (circular with no gaps) chloroplast genome of S. aralocaspica 146,654 bp in length was also assembled.
conclusionsWe have presented the genome sequence of the SCC4 plant S. aralocaspica. Knowledge of the genome of S. aralocaspica should increase our understanding of the evolution of SCC4 photosynthesis and contribute to the engineering of C4 photosynthesis into economically important C3 crops.
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