Evidence map›Paper›PMID 31512555›Full record

ArticleAutophagy2020

Quaternary structures of Vac8 differentially regulate the Cvt and PMN pathways.

Jumi Park, Hye-In Kim, Hanbin Jeong, Miriam Lee, Se Hwan Jang, So Young Yoon, Hyejin Kim, Zee-Yong Park, Youngsoo Jun, Changwook Lee

Abstract read
In one paragraph

Article in Autophagy, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. The Vacuolar Protein 8 (Vac8) Homolog inJournal of fungi (Basel, Switzerland) · 2025
    Article
  3. Article
  4. Diversity and structural-functional insights of alpha-solenoid proteins.Protein science : a publication of the Protein Society · 2024
    Review
  5. Article
  6. Article
  7. Mec1 regulates PAS recruitment of Atg13 via direct binding with Atg13 during glucose starvation-induced autophagy.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Nucleophagy-Implications for Microautophagy and Health.International journal of molecular sciences · 2020
    Review
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jumi ParkDepartment of Biological Sciences, School of Life Sciences, Ulsan National Institute of Science and Technology , Ulsan, Republic of Korea.ORCID 0000-0002-0684-9051
Hye-In KimCell Logistics Research Center, Gwangju Institute of Science and Technology , Gwangju, Republic of Korea.
Hanbin JeongDepartment of Biological Sciences, School of Life Sciences, Ulsan National Institute of Science and Technology , Ulsan, Republic of Korea.ORCID 0000-0002-3878-1813
Miriam LeeCell Logistics Research Center, Gwangju Institute of Science and Technology , Gwangju, Republic of Korea.
Se Hwan JangSchool of Life Sciences, Gwangju Institute of Science and Technology , Gwangju, Republic of Korea.
So Young YoonCell Logistics Research Center, Gwangju Institute of Science and Technology , Gwangju, Republic of Korea.
Hyejin KimDepartment of Biological Sciences, School of Life Sciences, Ulsan National Institute of Science and Technology , Ulsan, Republic of Korea.
Zee-Yong ParkSchool of Life Sciences, Gwangju Institute of Science and Technology , Gwangju, Republic of Korea.
Youngsoo JunCell Logistics Research Center, Gwangju Institute of Science and Technology , Gwangju, Republic of Korea.
Changwook LeeDepartment of Biological Sciences, School of Life Sciences, Ulsan National Institute of Science and Technology , Ulsan, Republic of Korea.ORCID 0000-0002-3016-9478

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Armadillo (ARM) repeat proteins constitute a large protein family with diverse and fundamental functions in all organisms, and armadillo repeat domains share high structural similarity. However, exactly how these structurally similar proteins can mediate diverse functions remains a long-standing question. Vac8 (vacuole related 8) is a multifunctional protein that plays pivotal roles in various autophagic pathways, including piecemeal microautophagy of the nucleus (PMN) and cytoplasm-to-vacuole targeting (Cvt) pathways in the budding yeast ABBREVIATIONS: Ape1: aminopeptidase I; ARM: armadillo repeat; Atg: autophagy-related; AUC: analytical ultracentrifugation; Cvt: cytoplasm-to-vacuole targeting; DIC: differential interference contrast; GFP: green fluorescent protein; GST: glutathione-S-transferase; ITC: isothermal titration calorimetry; NVJ: nucleus-vacuole junction; PDB: protein data bank; PMN: piecemeal microautophagy of the nucleus; prApe1: precursor Ape1; RMSD: root-mean-square deviation; SAXS: small-angle X-ray scattering; SD-N: nitrogen starvation medium; SEC: size-exclusion chromatography; tAtg13: Atg13 construct comprising residues 567-695; tNvj1: Nvj1 construct comprising residues 229-321; tVac8: Vac8 construct comprising residues 10-515; Vac8: vacuole related 8.

Indexed as

Adaptor Proteins, Signal TransducingArmadillo Domain ProteinsAutophagy-Related ProteinsChromatography, LiquidCross-Linking ReagentsCrystallography, X-RayCytoplasmDimerizationHydrogen BondingMicroautophagyProtein Conformation, alpha-HelicalProtein TransportReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionAdaptor Proteins, Signal TransducingArmadillo Domain ProteinsATG13 protein, S cerevisiaeAutophagy-Related ProteinsCross-Linking ReagentsNvj1 protein, S cerevisiaeReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiae ProteinsSirolimusVAC8 protein, S cerevisiaeVesicular Transport ProteinsAtg13autophagycrystal structurecytoplasm-to-vacuole targeting (Cvt)Nvj1piecemeal microautophagy of the nucleus (PMN)Vac8

Identifiers

PMID31512555
PMCPMC7469494

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.