Evidence map›Paper›PMID 31512107›Full record

ArticleVirologica Sinica2020

Comparative Transcriptome Analysis Reveals Different Host Cell Responses to Acute and Persistent Foot-and-Mouth Disease Virus Infection.

Jiadai Li, Lingling Han, Yao Hao, Yuncong Yuan, Mingzhen Wang, Xiu Xin, Hailong Wang, Fang Yu, Congyi Zheng, Chao Shen

Open access · greenAbstract readComparative Study
In one paragraph

Article in Virologica Sinica, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Jiadai LiState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, 430072, China.
Lingling HanState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, 430072, China.
Yao HaoState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, 430072, China.
Yuncong YuanState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, 430072, China.
Mingzhen WangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, 430072, China.
Xiu XinState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, 430072, China.
Hailong WangState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, 430072, China.
Fang YuDepartment of Pathology, Zhongnan Hospital, Wuhan University, Wuhan, 430072, China.
Congyi ZhengState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, 430072, China.
Chao ShenState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, 430072, China. shenchao@whu.edu.cn.ORCID http://orcid.org/0000-0003-4687-0127
Wuhan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Foot-and-mouth disease virus (FMDV) rapidly causes cytopathic effects in susceptible cells. Incomplete viral clearance during the acute infection leads to persistent infection. The relationship between host gene expression and the persistent infection remains unclear. In this study, we analyzed the transcriptome profiles of BHK-21 cells acutely and persistently infected with FMDV to identify differences in gene expression. GO and KEGG enrichment analyses showed that the 8,378 differentially expressed genes were significantly enriched in categories including metabolism, biosynthesis, ribosome function, and endocytosis. In persistently infected BHK-21 cells, ribosome- and translation-related genes were significantly down-regulated. There were more differentially expressed immune-related genes during persistent infection than during acute infection. Two hundred and seventy-four genes were differentially expressed in both acutely and persistently infected BHK-21 cells. Among these genes, heat shock protein family B member 1 (Hspb1) knockdown significantly inhibited FMDV replication. Our research provides a basis for further research to understand the mechanisms of persistent FMDV infection including the genes involved in FMDV replication.

Indexed as

Gene Expression ProfilingHost-Pathogen InteractionsAcute DiseaseAnimalsCell LineCricetinaeFoot-and-Mouth DiseaseFoot-and-Mouth Disease VirusImmunity, CellularKidneyRNA, ViralVirus ReplicationRNA, ViralDifferentially expressed gene (DEG)Foot-and-mouth disease virus (FMDV)Persistent infectionRNA-Seq

Identifiers

PMID31512107
PMCPMC7035396
OpenAlexW2973169168

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.