Evidence map›Paper›PMID 31511628›Full record

ArticleScientific reports2019

An Experimental Approach to Rigorously Assess Paneth Cell α-Defensin (Defa) mRNA Expression in C57BL/6 Mice.

Patricia A Castillo, Eric B Nonnecke, Daniel T Ossorio, Michelle T N Tran, Stephanie M Goley, Bo Lönnerdal, Mark A Underwood, Charles L Bevins

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Loss of sialic acid side-chainProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  5. Review
  6. Article
  7. Article
  8. Human intelectin-2 (ITLN2) is selectively expressed by secretory Paneth cells.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  9. Article
  10. Characterization of an intelectin-1 (Frontiers in immunology · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Patricia A CastilloDepartment of Microbiology & Immunology, School of Medicine, University of California Davis, Davis, CA, 95616, USA.
Eric B NonneckeDepartment of Microbiology & Immunology, School of Medicine, University of California Davis, Davis, CA, 95616, USA.
Daniel T OssorioDepartment of Microbiology & Immunology, School of Medicine, University of California Davis, Davis, CA, 95616, USA.ORCID http://orcid.org/0000-0002-5593-9766
Michelle T N TranDepartment of Microbiology & Immunology, School of Medicine, University of California Davis, Davis, CA, 95616, USA.
Stephanie M GoleyDepartment of Nutrition, College of Agricultural and Environmental Sciences, University of California Davis, Davis, CA, 95616, USA.ORCID http://orcid.org/0000-0001-9998-7519
Bo LönnerdalDepartment of Nutrition, College of Agricultural and Environmental Sciences, University of California Davis, Davis, CA, 95616, USA.
Mark A UnderwoodDepartment of Pediatrics, School of Medicine, University of California Davis, Sacramento, CA, 95817, USA.
Charles L BevinsDepartment of Microbiology & Immunology, School of Medicine, University of California Davis, Davis, CA, 95616, USA. clbevins@ucdavis.edu.ORCID http://orcid.org/0000-0003-2725-2622
University of California, Davis · USUniversity of California System · US

Funding

Novel Defensins in Human Epithelial TissuesR37AI032738 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BEVINS, CHARLES L · 2015 to 2022
$3.1M
Paneth Cell Secreted Effectors in Mucosal Innate ImmunityU01AI125956 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BEVINS, CHARLES L · 2016 to 2020
$2.3M
New Mouse Models of Paneth Cell Defensin FunctionR21AI099519 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BEVINS, CHARLES L · 2012 to 2013
$423k
NIAID NIH HHS R21 AI099519NIAID NIH HHS R37 AI032738NIAID NIH HHS U01 AI125956U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) U01AI125596
6 · The paper itself

Abstract

Abundant evidence from many laboratories supports the premise that α-defensin peptides secreted from Paneth cells are key mediators of host-microbe interactions in the small intestine that contribute to host defense and homeostasis. α-defensins are among the most highly expressed antimicrobial peptides at this mucosal surface in many mammals, including humans and mice; however, there is striking variation among species in the number and primary structure of α-defensin paralogs. Studies of these biomolecules in vivo are further complicated by striking variations between laboratory mouse strains. Herein, we report an experimental approach to determine with precision and specificity expression levels of α-defensin (Defa) mRNA in the small intestine of C57BL/6 mice through an optimized set of oligonucleotide primers for qRT-PCR assays and cloned cDNA plasmids corresponding to the Defa paralogs. This approach demonstrated marked differences in α-defensin expression in C57BL/6 mice with respect to proximal/distal anatomical location and developmental stage, which have not been described previously. These data underscore the importance of careful attention to method (primer choice, proximal vs. distal location, and developmental stage) in analysis of antimicrobial peptide expression and their impact.

Indexed as

Gene Expression Regulation, Developmentalalpha-DefensinsAnimalsFemaleIntestine, SmallMaleMiceMice, Inbred C57BLPaneth CellsRNA, Messengeralpha-DefensinsRNA, Messenger

Identifiers

PMID31511628
PMCPMC6739474
OpenAlexW2972549899

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.