Evidence map›Paper›PMID 31509386›Full record

ArticleJournal of the American Chemical Society2019

Measuring DNA Hybridization Kinetics in Live Cells Using a Time-Resolved 3D Single-Molecule Tracking Method.

Yuan-I Chen, Yin-Jui Chang, Trung Duc Nguyen, Cong Liu, Stephanie Phillion, Yu-An Kuo, Huong T Vu, Angela Liu, Yen-Liang Liu, Soonwoo Hong and 3 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. A Chemigenetic Fluorescence Lifetime Biosensor for Dopamine Sensing.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Recent Advances in Single-Molecule Tracking and Imaging Techniques.Annual review of analytical chemistry (Palo Alto, Calif.) · 2023
    Review
  7. Real-Time Feedback-Driven Single-Particle Tracking: A Survey and Perspective.Small (Weinheim an der Bergstrasse, Germany) · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yuan-I ChenDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Yin-Jui ChangDepartment of Mechanical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Trung Duc NguyenDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Cong LiuDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Stephanie PhillionDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Yu-An KuoDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Huong T VuDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Angela LiuDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Yen-Liang LiuDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Soonwoo HongDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.ORCID 0000-0002-7618-9052
Pengyu RenDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Thomas E YankeelovDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.
Hsin-Chih YehDepartment of Biomedical Engineering , University of Texas at Austin , Austin , Texas 78712 , United States.ORCID 0000-0001-6654-5626

Funding

DEVELOPMENT OF A NEXT-GENERATION NUCLEIC ACID FORCE FIELDR01GM106137 · NIGMS · WASHINGTON UNIVERSITY · PI JAY PONDER, Pengyu Ren · 2013 to 2026
$3.5M
Turning a sequence barcode into a spectral barcode for single-cell analysis.R21GM129617 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI FINKELSTEIN, ILYA J, YEH, HSIN-CHIH · 2019 to 2020
$398k
NIGMS NIH HHS R01 GM106137NIGMS NIH HHS R21 GM129617
6 · The paper itself

Abstract

Single-molecule detection enables direct characterization of annealing/melting kinetics of nucleic acids without the need for synchronization of molecular states, but the current experiments are not carried out in a native cellular context. Here we describe an integrated 3D single-molecule tracking and lifetime measurement method that can follow individual DNA molecules diffusing inside a mammalian cell and observe multiple annealing and melting events on the same molecules. By comparing the hybridization kinetics of the same DNA strand

Indexed as

Nucleic Acid ConformationAlgorithmsDiffusionDNAKineticsMarkov ChainsNucleic Acid HybridizationPhase TransitionSingle Molecule ImagingSolutionsTemperatureTime FactorsDNASolutions

Identifiers

PMID31509386
PMCPMC7179573

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.