Evidence map›Paper›PMID 31507631›Full record

ArticleFrontiers in genetics2019

The Cancer-Associated Genetic Variant Rs3903072 Modulates Immune Cells in the Tumor Microenvironment.

Yi Zhang, Mohith Manjunath, Jialu Yan, Brittany A Baur, Shilu Zhang, Sushmita Roy, Jun S Song

Open access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

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  18. Analysis and Interpretation of the Impact of Missense Variants in Cancer.International journal of molecular sciences · 2021
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  19. Germline Variants That Affect Tumor Progression.Trends in genetics : TIG · 2021
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yi ZhangDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, United States.
Mohith ManjunathCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, United States.
Jialu YanCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, United States.
Brittany A BaurWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, United States.
Shilu ZhangWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, United States.
Sushmita RoyWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, United States.
Jun S SongCarl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, United States.
University of Illinois Urbana-Champaign · USWisconsin Institutes for Discovery · USUniversity of Wisconsin–Madison · US

Funding

TRAININGU54GM114838 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SINHA, SAURABH, SONG, JUN S · 2014 to 2017
$10.8M
Predicting Transcriptional and Epigenetic Networks in Cancer from Sequencing DataR01CA163336 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Jun S Song · 2012 to 2026
$4.4M
NCI NIH HHS R01 CA163336NIGMS NIH HHS U54 GM114838
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have hitherto identified several germline variants associated with cancer susceptibility, but the molecular functions of these risk modulators remain largely uncharacterized. Recent studies have begun to uncover the regulatory potential of noncoding GWAS SNPs using epigenetic information in corresponding cancer cell types and matched normal tissues. However, this approach does not explore the potential effect of risk germline variants on other important cell types that constitute the microenvironment of tumor or its precursor. This paper presents evidence that the breast-cancer-associated variant rs3903072 may regulate the expression of

Indexed as

breast cancerfunctional characterizationGWASimmune cellsnoncoding varianttumor microenvironment

Identifiers

PMID31507631
PMCPMC6715770
OpenAlexW2960212387

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.