Evidence map›Paper›PMID 31506457›Full record

ArticleScientific reports2019

A new perspective on membrane-embedded Bax oligomers using DEER and bioresistant orthogonal spin labels.

Markus Teucher, Hui Zhang, Verian Bader, Konstanze F Winklhofer, Ana J García-Sáez, Andrzej Rajca, Stephanie Bleicken, Enrica Bordignon

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
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  12. Spin-labeled nanobodies as protein conformational reporters for electron paramagnetic resonance in cellular membranes.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Article
  14. ChemistryOpen · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Markus TeucherFaculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany.
Hui ZhangDepartment of Chemistry, University of Nebraska, Lincoln, Nebraska, USA.
Verian BaderInstitute of Biochemistry and Pathobiochemistry, Ruhr University Bochum, Bochum, Germany.
Konstanze F WinklhoferInstitute of Biochemistry and Pathobiochemistry, Ruhr University Bochum, Bochum, Germany.
Ana J García-SáezInterfaculty Institute of Biochemistry, Eberhard Karls University Tübingen, Tübingen, Germany.ORCID http://orcid.org/0000-0002-3894-5945
Andrzej RajcaDepartment of Chemistry, University of Nebraska, Lincoln, Nebraska, USA.
Stephanie BleickenFaculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany. stephanie.bleicken@rub.de.ORCID http://orcid.org/0000-0002-4789-0974
Enrica BordignonFaculty of Chemistry and Biochemistry, Ruhr University Bochum, Bochum, Germany. enrica.bordignon@rub.de.ORCID http://orcid.org/0000-0003-2450-5161

Funding

New Nitroxide Spin Labels for Distance Measurements in Biological SystemsR01GM124310 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI RAJCA, ANDRZEJ · 2017 to 2020
$1.7M
NIGMS NIH HHS R01 GM124310
6 · The paper itself

Abstract

Bax is a Bcl-2 protein crucial for apoptosis initiation and execution, whose active conformation is only partially understood. Dipolar EPR spectroscopy has proven to be a valuable tool to determine coarse-grained models of membrane-embedded Bcl-2 proteins. Here we show how the combination of spectroscopically distinguishable nitroxide and gadolinium spin labels and Double Electron-Electron Resonance can help to gain new insights into the quaternary structure of active, membrane-embedded Bax oligomers. We show that attaching labels bulkier than the conventional MTSL may affect Bax fold and activity, depending on the protein/label combination. However, we identified a suitable pair of spectroscopically distinguishable labels, which allows to study complex distance networks in the oligomers that could not be disentangled before. Additionally, we compared the stability of the different spin-labeled protein variants in E. coli and HeLa cell extracts. We found that the gem-diethyl nitroxide-labeled Bax variants were reasonably stable in HeLa cell extracts. However, when transferred into human cells, Bax was found to be mislocalized, thus preventing its characterization in a physiological environment. The successful use of spectroscopically distinguishable labels on membrane-embedded Bax-oligomers opens an exciting new path towards structure determination of membrane-embedded homo- or hetero-oligomeric Bcl-2 proteins via EPR.

Indexed as

Spin Labelsbcl-2-Associated X ProteinCell MembraneElectron Spin Resonance SpectroscopyEscherichia coliGadoliniumHeLa CellsHumansNitrogen Oxidesbcl-2-Associated X ProteinGadoliniumNitrogen OxidesnitroxylSpin Labels

Identifiers

PMID31506457
PMCPMC6737250

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.