Evidence map›Paper›PMID 31506353›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Intracellular redox potential is correlated with miRNA expression in MCF7 cells under hypoxic conditions.

Hannah Johnston, Paul Dickinson, Alasdair Ivens, Amy H Buck, R D Levine, Francoise Remacle, Colin J Campbell

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
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  5. Review
  6. Surface-enhanced Raman scattering: An emerging tool for sensing cellular function.Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology · 2022
    Review
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hannah JohnstonSchool of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom.
Paul DickinsonInstitute of Infection and Immunology Research, The University of Edinburgh, Edinburgh EH9 3FL, United Kingdom.
Alasdair IvensInstitute of Infection and Immunology Research, The University of Edinburgh, Edinburgh EH9 3FL, United Kingdom.
Amy H BuckInstitute of Infection and Immunology Research, The University of Edinburgh, Edinburgh EH9 3FL, United Kingdom.
R D LevineInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel; rafi@fh.huji.ac.il colin.campbell@ed.ac.uk.
Francoise RemacleTheoretical Physical Chemistry, Molecular Systems Research Unit, University of Liège, B4000 Liège, Belgium.
Colin J CampbellSchool of Chemistry, The University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom; rafi@fh.huji.ac.il colin.campbell@ed.ac.uk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hypoxia is a ubiquitous feature of cancers, encouraging glycolytic metabolism, proliferation, and resistance to therapy. Nonetheless, hypoxia is a poorly defined term with confounding features described in the literature. Redox biology provides an important link between the external cellular microenvironment and the cell's response to changing oxygen pressures. In this paper, we demonstrate a correlation between intracellular redox potential (measured using optical nanosensors) and the concentrations of microRNAs (miRNAs) involved in the cell's response to changes in oxygen pressure. The correlations were established using surprisal analysis (an approach derived from thermodynamics and information theory). We found that measured redox potential changes reflect changes in the free energy computed by surprisal analysis of miRNAs. Furthermore, surprisal analysis identified groups of miRNAs, functionally related to changes in proliferation and metastatic potential that played the most significant role in the cell's response to changing oxygen pressure.

Indexed as

Cell HypoxiaCell Line, TumorCytoplasmGene Expression Regulation, NeoplasticHumansHypoxiaMCF-7 CellsMicroRNAsOxidation-ReductionReactive Oxygen SpeciesThermodynamicsTumor MicroenvironmentMicroRNAsReactive Oxygen Speciesbreast adenocarcinomahypoxiaSERS nanosensorssurprisal analysistumor microenvironment

Identifiers

PMID31506353
PMCPMC6765294

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.